XLOC_010391 (CU469524.2)


Basic Information

Item Value
gene id XLOC_010391
gene name CU469524.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4234727 ~ 4267736 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020434
gaatagttggcagttcattccgcagtggtgccccctgataaataagggactaagctgaaatgaaacGAATGAGTTATATCAGATTACACTGCATTCATTAGATGCATTTCATTGGTTCTTTTATTCCATGGGAATCCAACCCATGATGTTTTCTCACAGTGGACCAATATACAAGCAGCAAATGCTTCTGAATGCAAAAAGAGAGTGGACATCCCTGCTTATTCCTGCGGTCACGTTTTCATTGTCCGTCTCAAATAGCTCTGAGTTTGTGTACGGCTGTCCAGCATGCAACGTGGCTCCTGTCTGTTTATTTGCAGACGTCAGAGATGCTCGGTGTGGTCAAGTGACTGCTGACTTCATGGAGTCTGAGAAGGTGACCTTGCCCTCATTGTCTATAAACATCAACTGGAGGTCAGCCAGCAGTCAGACCACACCGACGAGCATTTCCAGCACCGCTGCCCGAGTCCTGGAGGATCTGCTGTGTCCATCTGCCTTCAGCGCTCAATATTTACCCAAGTAAAGGTGACTCTTGTATACAAGGAGATTCCTGTATATGATCCAGCGTCCGTGACATCTGAACGTATCATGGCAGCTCATGCTACTTTTAGCATATCGAGCCTCATGACTGGACTCGCTTGTCATGGAATTTATCCAGAATATTCTTGCAGAGACTTTCACAAAGCCTCATGTAAACACCCTCCACTGAAGCTTTGATCAACATATACTCAACAGAGCTTGTCTCTTGAATTTCTCTAATGCCTGATAAAAGTTTACGAGATGATTAGATGATTGTTGTTAGTATACTCTGGGATGAACTACATGTGTTATCGCTCATGGCAAATAAAGTGCACATTAAATGCAGAACAGAACATCACTAAAACTGCACTTTTATTGAGAATAAATTCAAATGTGATGTGAGATGGGAAAAGTGAGTAGAGCAAACTTGGCAAAAGCCTGACTCGAACCCATTTAACTGCATTATGAGCTAGTTCTCAGTacttaatgtaatgtgtgataacaacccaggctcattggaaatatgtgccttgGACTATTATTATTGAGAACTGACAAATATATACCCTGGACTACATTACAGTTTTTCCTaattgctttgatgcagccgtccactgaaactccacattttcaaaacagttaacacacaggcctaattaGCAGCACTCATGGttgaaatgacacattttgcttgcaaaacacACATACCgagtcaaaacatttaaaatatgcaacaaaagctagttttaccttcaaacaacacaacttgcaaacaagtataagagctctttcaattaatcattacacaatggacaacaaaatacaaaatacagaagaaAAAAGCTGTTTAATCAAAACAGGTTTCGTTTAAAAGCACCAAAATACATAGtctatatttactgaaaaatggATCAAAATAATAACTTTCATAgcgggtgtactcatttatgctgtgaCTGAATTAAGAGTATAAGCCAGTGCAGGTTGGTAT
>TCONS_00020435
CTGAGTCAAACCCACAACAGATTTGACTGATTGCTGCTTTCTGGGACGGTTGTAACTGTGCTATTTAGCGTGGGCTGTAAGACGTCAGAGATGCTCGGTGTGGTCAAGTGACTGCTGACTTCATGGAGTCTGAGAAGGTGACCTTGCCCTCATTGTCTATAAACATCAACTGGAGGTCAGCCAGCAGTCAGACCACACCGACGAGCATTTCCAGCACCGCTGCCCGAGTCCTGGAGGATCTGCTGTGTCCATCTGCCTTCAGCGCTCAATATTTACCCAAGTAAAGGTGACTCTTGTATACAAGGAGATTCCTGTATATGATCCAGCGTCCGTGACATCTGAACGTATCATGGCAGCTCATGCTACTTTTAGCATATCGAGCCTCATGACTGGACTCGCTTGTCATGGAATTTATCCAGAATATTCTTGCAGAGACTTTCACAAAGCCTCATGTAAACACCCTCCACTGAAGCTTTGATCAACATATACTCAACAGAGCTTGTCTCTTGAATTTCTCTAATGCCTGATAAAAGTTTACGAGATGATTAGATGATTGTTGTTAGTATACTCTGGGATGAACTACATGTGTTATCGCTCATGGCAAATAAAGTGCACATTAAATGCAGAACAGAACATCACTAAAACTGCACTTTTATTGAGAATAAATTCAAATGTGATGTGAGATGGGAAAAGTGAGTAGAGCAAACTTGGCAAAAGCCTGACTCGAACCCATTTAACTGCATTATGAGCTAGTTCTCAGTacttaatgtaatgtgtgataacaacccaggctcattggaaatatgtgccttgGACTATTATTATTGAGAACTGACAAATATATACCCTGGACTACATTACAGTTTTTCCTaattgctttgatgcagccgtccactgaaactccacattttcaaaacagttaacacacaggcctaattaGCAGCACTCATGGttgaaatgacacattttgcttgcaaaacacACATACCgagtcaaaacatttaaaatatgcaacaaaagctagttttaccttcaaacaacacaacttgcaaacaagtataagagctctttcaattaatcattacacaatggacaacaaaatacaaaatacagaagaaAAAAGCTGTTTAATCAAAACAGGTTTCGTTTAAAAGCACCAAAATACATAGtctatatttactgaaaaatggATCAAAATAATAACTTTCATAgcgggtgtactcatttatgctgtgaCTGAATTAAGAGTATAAGCCAGTGCAGGTTGGTAT
>TCONS_00022080
TCTCCCTTCCGTAACCAGCCAATGAGACGTCAGAGATGCTCGGTGTGGTCAAGTGACTGCTGACTTCATGGAGTCTGAGAAGGTGACCTTGCCCTCATTGTCTATAAACATCAACTGGAGGTCAGCCAGCAGTCAGACCACACCGACGAGCATTTCCAGCACCGCTGCCCGAGTCCTGGAGGATCTGCTGTGTCCATCTGCCTTCAGCGCTCAATATTTACCCAAGGTGACTCTTGTATACAAGGAGATTCCTGTATATGATCCAGCGTCCGTGACATCTGAACGTATCATGGCAGCTCATGCTACTTTTAGCATATCGAGCCTCATGACTGGACTCGCTTGTCATGGAATTTATCCAGAATATTCTTGCAGAGACTTTCACAAAGCCTCATGTAAACACCCTCCACTGAAGCTTTGATCAACATATACTCAACAGAGCTTGTCTCTTGAATTTCTCTAATGCCTGATAAAAGTTTACGAGATGATTAGATGATTGTTGTTAGTATACTCTGGGATGAACTACATGTGTTATCGCTCATGGCAAATAAAGTGCACATTAAATGCAGAACAGAACATCACTAAAACTGCACTTTTATTGAGAATAAATTCAAATGTGATGTG

Function

GO:

id name namespace
GO:0030388 fructose 1,6-bisphosphate metabolic process biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0019838 growth factor binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117664

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020434 False 1507 lncRNA 0.40 2 4234727 4238361
TCONS_00020435 False 1271 lncRNA 0.40 3 4234727 4241985
TCONS_00022080 True 621 lncRNA 0.44 3 4235317 4267736

Neighbor

gene id symbol gene type direction distance location
XLOC_010390 CU469524.1 coding downstream 22792 4210477 ~ 4211935 (-)
XLOC_010389 rrp15 coding downstream 31705 4196932 ~ 4203022 (-)
XLOC_010388 NA coding downstream 54760 4179036 ~ 4179967 (-)
XLOC_010387 si:ch211-175f12.2 coding downstream 203341 4010967 ~ 4031386 (-)
XLOC_010386 NA coding downstream 438094 3784874 ~ 3796633 (-)
XLOC_010392 vegfaa coding upstream 19806 4287542 ~ 4317879 (-)
XLOC_010393 ppp1r8b coding upstream 245861 4513597 ~ 4531657 (-)
XLOC_010394 BX927222.1 coding upstream 259745 4527481 ~ 4527647 (-)
XLOC_010395 mrpl51 coding upstream 273245 4540981 ~ 4547193 (-)
XLOC_010396 NA coding upstream 286335 4554071 ~ 4558497 (-)
XLOC_010626 CR392024.2 misc upstream 16627376 20895112 ~ 20895175 (-)
XLOC_010384 NA non-coding downstream 886018 3348006 ~ 3348709 (-)
XLOC_010380 NA non-coding downstream 1422719 2809717 ~ 2812008 (-)
XLOC_010399 NA non-coding upstream 417927 4685663 ~ 4695623 (-)
XLOC_010404 LO018201.1 non-coding upstream 793763 5061499 ~ 5061629 (-)
XLOC_010405 CU694364.1 non-coding upstream 839562 5107298 ~ 5107417 (-)

Expression


Co-expression Network