XLOC_010393 (ppp1r8b)


Basic Information

Item Value
gene id XLOC_010393
gene name ppp1r8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4513597 ~ 4531657 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020437
GTCCGTTCACTTATTTTTTCCCAGAGTGCTCGGCGTGTGTGTAGCTGTAAAGAAGAATGTGTGACAATGGCAACAAATACTGCAGAGAAGAATCCATATTTTGACTGTCCTTCATGGGCAGGAAAGCCTCCAGCAGGGCTGCATTTGGACGTGGTGAAAGGAGATAAACTTGTTGAGAAACTGATCATCGATGAGAAGAAGTTTTATTTATTCGGGAGGAACCCGGACATCTGCGACTTCACCATCGACCATCAGTCGTGCTCTCGTGTGCATGCGGCGCTCGTCTACCACAGACATCTGAAAAGACTCTTTCTGATCGATCTTAACAGCACACATGGCACATTTCTTGGACACATTCGGCTGGAGCCCCACAAGCCCCAGCAGGTTCCCATTGACTCCACCATGTCGTTTGGCGCTTCTACTCGTGTTTACACCATTCGGGAGAAACCTCAGGCTCAACCAGGCGCTGGCGTTGGGGACATTAAAACCGGTGATGACGAGGAGCTGAAgggacttctgggacttccagaagAAGAAACCGAACTGGAGAACCTCACTGAGTTCAACACGGCTCATAACAAGCGCATCTCCACCCTCACCATAGAGGAGGGCAACCTGGATATCCAGAGGCccaagaggaagaggaggagctcCAGAGTGTCCTTCAATGAAGATGATGAGATCATAAACCCAGAGGATGTCGACCCCTCTGTTGGCCGCTTCAGAAACATGGTCTCAACCGCTGTCGTTCCTATTAAGAAAAAGAAAGCAGGCGGCAGTAACGCGCTGGGAATTGAGGAAACGGTAGCGCGACACATGCACACATTCCCATTGCAAGGCGGCCTGTACAGAGACCTTCCTCCTGCCGGACATGAAGCTCAGTCTACAGCAGGTCCCGGCGGAGCTACGATCCTGGGTGGAATGATGTTACCAATGCCGAACCCAGCCCCGGATGTAGACCCGACCCATGAGGCGCTGCCACCGCCGCCGCTCATGCTCAATCCCACACCGATGACCGGCCCATACGTATCTGACGTCCTCAACGAACCCCGCAAGAAGAAGTACGCCAAAGAGGCATGGCCTGGGAAGAAGCCCACCCCGTCTCTGCTCATTTAACTCCCTCATCAACCATATCTGGAGCTGCAAGAATCCCAGACTTTTGGGGTTTAGTGTCTGAGTTCAGTGAAACACAAGGCGAATTGTCCACAATTTACTAACGAAAAGGTTTTCTAAATTCGTTTTTATCTTGTTTGTAGTACAAATATCTACAAATCCTAAATTGACAGGGATTTAGGTTGCAAGTTGAAAATGTTTTCAgaaatgtaatgttatattttatatatgatataatatgtctaattaagtgagtttttttcctaaaacaggctaaataatagttttttggcacataatttagcttgttttaaggaaagtttatattaattttaatttatattattatttctgaaaaaaaaaacaatatttttatttcttgatttaagaattttttatttttatttggacaagaaacaagtgAAAACCTAAATAAGAGAAACATTTTTGCAGTGTCGCACAATTCAGTTtaattaaaggggtggttcactcAAATAGTCTCGCTTTTAAATGGTTCTAAACTTTTTCTGGGGTTTTTTTTCCCTGTTGAACAAAACAAGATTCAGAATGTctggttttgtgttcaacagaagaaaagaaaatctgaaaagtttgtttttgtgtcgtttctagtccaaatatctaaattctAAACTCGAAGgtcaaaaattagttttttttttttttcttaaaacaagctaaataatctgctagAGGGGTCagtacaataatattttagttttttcaccACTAGCACATAAGTTAGTTTCCTTTAATGAAATCGATCTTAATTTTGATTgagtatttctgaaaacaagactagaaacaggacaaactCCTCATAGTTTATCAAGTAAGAGAgattttataattttgtttttcttctgttaaacacaaaacaagatattctcgtttctagtccaaatatctaaacattctcaACTCGAAGGTCAAAAATGGAGTTTTCAgaaataagtgagtttttttcttaaaacaagctgaataatctgccagtgggctCAGTACAATAATCTTTTCATTTTTCACCACTTGCATGTAAGTTAGCTTGTTTACAGAATTAATAAATCGAAATTAGGataaattttccttaaaacaagacagtatttcTAACTGCTTCTTGATTAGAGACTTTATAggtatttggactaaaaacgagACAAACTCCTCGTAGTTTATCAAGTAAGAAaggttttatgattttttttctcttctgttgaacacaaaacaagatatcctaaagtttttgtctcgtttctagtccagatatctaaaaatcttaaatcaaaggTCAAAAATGAGGTTTCAGaaatatgagttttttttcttaaaacaagctaaataaggTGCCAGAGGGCCCAGTACAATAATCTTGTTCTCGTTTTTACCATTAGCATGTGTTTTAAGGAAATTGTATCTTAATTTTGATAGAttatcaaaacaatatttttacttgtctaaaaTGCTTCTGTATTTAGGCTTTTTTAAggtatttagactagaaacaagtcaaaaaaactaaataagaaaGGCCTTTTTGCAATGTCGCACAATTCAGTTTAAattaaggggtagttcaccccaaaatttcaATTCTCATTCAAATTGTTCtgaatttttatgatttttttcttgTTGAACAGAAAACCAGATATTCTGAGTAACATTAGAAAAAAGTAGTTGAAGatgctatagaagtcaatggctgtttttttcaagCGTTCTTCAGTACGTCATtagtgttcgacagaagaaagaaactcaaacaggattgataaaataaacatttaaatttggcgagtaaatgatgacagaatattcatttctGAATGAACTTTAAAAAGATGTTGTTTATTGCACACTGTACAATATAGctgtgtttcccaaccctgttcctgaaggcacaccaacagtacatattttggatgtctcccttatctgatccattaacttcaggttttgtagtcttctaatgttctgctgagttgattcaggtgtgttcgattagggaggggttgaaaatgtgtactgttggtgtgccttcaggaacagggttgggaaacactgctctaaagtGATACTTCTGACTTTCTGTATCTTGACCGTAAAGTTTCTTTTAAACTCTGGAGTTacattaaccctttgatgcataTATAGGGggtaaagcagtgtttcccaaccctgttcccgaaggtacaccaacagtacataatTTAGATgtccttatctgacccattcatttcaggttttggagtcttcTAATGTTCTGCTGAGTTGATTCACGattgtttgattaggaagaggttgaaaatgtgtattgTTAGTGTgtctttaggaacagggttgggaaacactgctctaaagtaACCGACTGACTTCTGACTTACTGTATCTTACTTGACCGTTGAGTTTCTTTTCAACTATGGAGTTacattaaccctttgatgcataTATGagtctaaagcagtgtttcccaaccctgttcctgaaggcactccaacaatgcatcatttagatgtctcccttatctgacccaataacttcaggttttggagtcttcTAATGTTCTGCTGAGTTGATTCAggagtgtttgattaggaagaggttgaaaatgtgtactgttggtgtgccttcaggaacagggttgggaaacactgcattaTAGTGTGTAATAATTTGATCTGGTCTTTCAATCTAAATTGAAATGCGTGAACATTATGCCTTTTAGACCTGTTGTGTTTCACAGGAAAGTTGCAGCAATGTAAGAGACTAAATGACTTTTATTAATTGTTGATCTGTTTGTTTTATACTATGCTGGTTTGGAGATGTTGAGAACATGATGAAAGTACTACGATGACCCGGATTTTAAAATGTGTACCGTTTAGCCTGAGATTAAAGGGGCTTCTCTTTTTATAGTGTACATTCTCTCTTTTTAGATGACCGTTTATGTAAAATGTTTACAGGAATGCCAATGATCAGATATTCACAAGCACATCTTTCAATTCAAACCACTATTGctgggatgtcaaactcaattcctggagggcaacacccctgcacagtttagttccaaccctgcttcaacacacttacctggaggtttcaaacaagcctgaagaacttaattagtttgatcaggtgtgtttaattaggtttggaactaaactACGCAGgcctgcggccctccaggaactgagtttgacatccctgcactATTTTCATTCGGTTTTACCTTCACATGTACATTAGTGTCATTTAAAGAGATCATTCACCCCCTCAGAAAATCAATACACTCATGCAAAACAATTACTTGTTAAACAGAATAAGATATTGTGAAGACTGTCAGccattgatatatttatataagaaCAAAAAAGTCACAGCGTTCTTCAAAAtaagtgttcagcagaagaaagaaactgtttTGAACGTGGCCGAATTTTCATttattgggtgaactgtccctttgaaACAAGATGAGTTGTTCACAATCCTGTACTAGTCTTCAAATCTAGTGAAATTCTACATTACTGTAAGACTTTGTTGTTATTCCTCTTTCAGCAGCCCCACCGCTTTCATATTTTCATTTCCATCATTAATATGCATACCGAGTGACTCTCCAGCATTTCAGATGAACTCTGTGTATGGAAATGCAGTTCATCAGGTGTCTTATTATAGACTGTGTTCACTGAGGAGAGGGGAAGACCTGTTTTGTActcttgtgtttttcttttggtACACTTGTGTTTTTGTACATGACACAATAAAAGCcagtgtattttta

Function

symbol description
ppp1r8b Predicted to enable mRNA binding activity and protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in negative regulation of protein dephosphorylation. Predicted to be active in nuclear speck. Orthologous to human PPP1R8 (protein phosphatase 1 regulatory subunit 8).

GO:

id name namespace
GO:0035308 negative regulation of protein dephosphorylation biological_process
GO:0016607 nuclear speck cellular_component
GO:0004865 protein serine/threonine phosphatase inhibitor activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1271 Predicted to enable mRNA binding activity and protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in negative regulation of protein dephosphorylation. Predicted to be active in nuclear speck. Orthologous to human PPP1R8 (protein phosphatase 1 regulatory subunit 8).

Ensembl:

ensembl_id ENSDARG00000022430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020437 True 4915 mRNA 0.38 7 4513597 4531657

Neighbor

gene id symbol gene type direction distance location
XLOC_010392 vegfaa coding downstream 195718 4287542 ~ 4317879 (-)
XLOC_010391 CU469524.2 coding downstream 245861 4234727 ~ 4267736 (-)
XLOC_010390 CU469524.1 coding downstream 301662 4210477 ~ 4211935 (-)
XLOC_010389 rrp15 coding downstream 310575 4196932 ~ 4203022 (-)
XLOC_010388 NA coding downstream 333630 4179036 ~ 4179967 (-)
XLOC_010395 mrpl51 coding upstream 9324 4540981 ~ 4547193 (-)
XLOC_010396 NA coding upstream 22414 4554071 ~ 4558497 (-)
XLOC_010397 arnt coding upstream 38760 4570417 ~ 4610278 (-)
XLOC_010398 cyp4t8 coding upstream 84004 4615661 ~ 4640578 (-)
XLOC_010399 NA coding upstream 154006 4685663 ~ 4695623 (-)
XLOC_010626 CR392024.2 misc upstream 16363455 20895112 ~ 20895175 (-)
XLOC_010386 NA non-coding downstream 716964 3784874 ~ 3796633 (-)
XLOC_010384 NA non-coding downstream 1164888 3348006 ~ 3348709 (-)
XLOC_010404 LO018201.1 non-coding upstream 529842 5061499 ~ 5061629 (-)
XLOC_010405 CU694364.1 non-coding upstream 575641 5107298 ~ 5107417 (-)
XLOC_010408 NA non-coding upstream 638118 5169775 ~ 5173443 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_04027497_04039742 PPP1R8B, PPP1R8 coding CI01000065 null 4026510 ~ 4039742 (-)