CI01000065_04684547_04687726


Basic Information

Item Value
gene id CI01000065_04684547_04687726
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4683420 ~ 4687726 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_04684547_04687726.mRNA
GTATATAAATGCATCAGTATGCAAAACATTATCCAGCTATTCATTTGAAATTAGCTTGTTTAAAACAAGCTAAACAGTAACATGTGTTCTTCTGCTTGATGTGCTTTTAGTGTAACTTTTTCCCCATTTGAGTCCCTGCTGTCTCATGCTTTCTTCCTGTGCAGTATCCACAATGATTCATCAGTTAAGTCAGTTATTCATTTGTTCTATGTCAACTATTAATCACATATCTAAAAAACTTGCTGTAAGGAATGTTCTGAGGAATTCAAGTGTCTGTAAGGCAAAAGGAGTGTCCCGTCACATGATCTAAAGCGTGTAAACCCTGGCTGCCTAAGGTGGGTGTTAATAATTGTATCTTTCACCTATTGGATAACACATACGTGAAGGGTGTCTCCTTTTCTCTGACCTAGCTTCTCATTGACCAATCTACTCTCTCCTCTTGTGAGATGGTCCAACACACCCGGGGGTGTGTAACGTGCCGTGCACCACTGTGGGTGGTTCCTCTTAGACACTGCAGCACATATGCCTCAGTGAGACATAGGTGTGCTGAACGAGCACTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTCCATTTTTAGAGTTCTATTTTTGCTCCCTATACTTTTGGCAATTACCTATACAAGTGTTTACATCAAGCCATTCACAACTGTTAAGAGTCTGTCGACCAGGCAGTTTGATTCTAACAGTTTGTTCCTTGCTTGAGTGAGGTGGGAGGGGCTGACTGGATCATAGTACTCTCTCTCTCTTTCTCTTTTACACACACCCCCTCTCATTGCAACTCTGCCAGTCCGGACTATGCTCACTTCCAAGGAAGGCTGAGTGAAGGAGAGAACAGATTTCCTTTTCTTAGTTTTTCCTTTGCCTCTGAGAAAGTTTGAGAAGAAAGAAGAAACCCTTTTGATGAGGAAGGAAGTTAGCTAAACAACAACGGACAAACACAAAATAGCAGGTTGTATTTATTTTTAGTGTCTTTTTTGATTGAATTGGTAGCACGTGGCAGCAGGCTCTGCCATAGGACCCTGGAGAGTGAGGTCATTCAGTGATTTATTCTTCTTTGGCATAGCTGTTCCTGTTTACTTAGACGCTGCAAGACTAAGGAAGCACAATGGTTGCTGGAATGGTTATGCCCCTTGACAACCTGAAGGCCATCTACGAGCATCTGTTTCGGGATGGCGTCATGGTGGCCAAGAAAGACAAGCGCCCCCAGACCATGCATCCTGAGATTCCTGGTGTGGAAAACCTGCATGTGATAAGAGCCATGGGTTCGCTGAAGTCCAGGGGATATGTAAGGGAGACCTTTGCGTGGAAGCATTTCTACTGGTACCTTACTAATACAGGAATTGTATACTTGCGTGATTACCTACATTTGCCTCCAGAGATTGTGCCCACTCCTCTACAGAGAGTACGACGGCCAGCTGCCACTCTGGCCATCGCCCGCAGGGCGGAACAGGTTCAATCTGTTCAAGGTCCAACTTCTTATGTTCCCAAACCCGGCAAGATGGGTGCAGAGGCTTTGATGGATCGACAGGGGTACCGTCGCAAAACGACAAGTGTGGATGAACCTGAAATTACTGAATCCAGTGACAGAACACCAAGATTTAGAGGTCGTCCAATGGCTAGCAGTCAGATCAAACCCAGAGGATCATGGGAATCCAGAGAGCAGCCCATGCTTTCTGAAACTCGTGATTACACCAAAGAGATGGAACCAAGTGTTAGGAGGAAGATTGCTATCCATTCAGTCTCTCATATTCCTTCTATTGAAACTTGCCATGCTAAGCCAGTTGAACAGGAAAAGATGGTGGAACTCAGGGAATGCACCAAGGCAGCATTCGTTCAGAAACTACAAAAGGTTGATGTGAACCCAGATGTGTCAACCATTTCGTCAACACTGGGGGCAACAGCAGTAGAATCCAAAAGCCAAAAGAAGCCAAAAGAAGAAGTGCCTATCAAGGTTTCTCATGAAACAACATCCACAGCAACTGACGATGGCAAAACGGTTAGGGATGCTCATCATCCTACTCCCTCAAAACCGAAGGTGGAGAAAACACAGAAAACCCTTGTGACGAAAAATATGCAGGATGTGCCAATTGTTTCATCAGCAGAGGGAACAATTGCAGTGGAATCCTCTGTGTTTTCTGTCCATACTGAAGCAGTCAAAGAAAAGCCCAAGGAAGAGGTGTTTATGGAGGTCTCCCAGCAAACTACATCCACTGTAATAGGTGATAGCAAAACAGCTAAGGATGTTCCTCGACATACTCCCTCAAAACCCAAAGTGGAGAAAACACAGAAAACTATTGTGGCCAAAAGTGTGCTGGATGTTTCAAATGTTTCATCAACAGTGGGTGCAACAGCAGATAAATCATCTGTGTCTTCTGTCCAAACTGAAGCAGCTAAAGAAAAGCCAGTGGAAGAGGTGTTTATTAAGGTCTCTAAGAAAACCACATCCACAGTAGCAGATAGTAGCAAAAAGGCTAAAGATGCTCTTCATCCTATTACTTCAGAACTGAAGGTGGAGAAAACACAGCAAACCCTGGTGACAAAAAATGTACAGGATGTGCAAACTGTTTCATCAGCAGTGGAGACAACTGTAGTGAAGACCTCTGTGTTTTCTGTTACTACTGAAACAGTCAAAGAAATACCAAAGGAAGACATCTGTGTCAATGTCTCACAGGAAACCACATTCAAAGGTGATATCAAAATGGACAAGGATGCTTCTTGTCATACTCTCTCAAAACCGAAGGTGGAGAAATCACAGAAAACCACAAAGACCAAAAATGTGCAGGATATACCAGCTGTTTCGTCAACAGTTGAGGCAACAGCAGTAAAATCCGCCATGTTTTCTGTCTCTACCGAAGTAGTCAAAGAAGTGCCCAAGGAAGAAGTGTGTATCAAGGTCCCTCAAGAAATAACATCAACAGGTGATAAAAAAACAGATAAGGATGCTCCACATCCTACTCCATCCAAACCAAAAGTGGAGAAAATGCCGAAAACCACAAAGACTAAAAATGTGCAGGATATACCAGCTGTTTCGTCAACAGTTGAGGCAACAGCAGTGAAATCCGCCATGTTTTCTGTCTCTACTGAAGTAGTCAAAGAAGTGCCCAAGGAAGAAGTGTGTACCAAGGTCCCTCAAGAAATAACATCCACAGGTGATAGAAAAATGGAAAAGGATGCTCCACATCCTACTCCATCAAAACCAAAAGTGGAGAAAATGCCGAAAACCACAAAGACCAAAAATGTGCAGGATATACCAATTGTTTCGTCAGTTGGGACAGTTGCAGCAGCAGCAGTGGAATCATCTGTTGTTTCTGTTTCTGCTGAAGCAGTCAAAGAAAATCCCAAAGAAGATGTATATATAAAGGTCTCCCAGGAAACCACATTCACAGTAACTGACGATAGAAAAATGACTAAGGATGCTCATTGTCCTACTCTCTCAAAACCGAAGGTGGACAAAACAGAGAAAACCTTTGTGACCAAAAATGTGCAGGATGGAACAACTGTTTCAACAGCAGTGGAGACAATTACAGTGAAATCCTCTGTGTCTTTGGTTTCTGATGAAACATCAAAAGAAAAGCCCAAGGAAGAACTATTTGTCAGTGTCTCTCAAGGTGCCACACCCAAAGTTGATAGCAAAGAGGATAAGGATGCTTCACATCATACTCCAATACCAGAACAAGAGAAAAAGCAGAAAACAACAAAGACCAAAAATGTTCAGGATAAACCAACCATTTCGTCAACAGTGGGGGCAACAGTATTTTCTGTCTCTGATGAAGCAGTCAAAGAAGAACCCAAAGAAGAGGCATTTATAAAGGTCCCTCAAGAAACCACATTCACAGTAACTGATGATAGCAAAATGGCTAAGGATGCTCCTCGTCCTACTCCATCAAAATCAAAAGTGGAGAAAACAAAGAAATCCAAAAAGACCAAAAATGTGCAGGATATACCAACCATTTTGTCAACAGTGGAGGCAACAGCAGTGGAATCCTCCATAGTTTCTGTCTGTACTGAAGCAGTCAACGAAGAGTCCAAGGAAGAAGTGTGCGTTAATATTTCTCAAGAAACCACATCCACAAGTGGTAACAAAATGGATAAGGATGCTAGTTGTCCTACTCCATCAAAACCAGAAGTGGAGAAAACGCAGAAAACCACAAGGACCAAAATTGTGCAAGAACAACTAATCAAGAACGAAACAGCAGATGTTACACATGAGACATCAATTGCACCACATCATGTGCCTGCTGCTAATGCAGAGGAGGTGAAGCCAAATACCTCCATTAGCTCCCAG

Function

NR:

description
Plectin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_04684547_04687726.mRNA True 4307 mRNA 0.43 1 4683420 4687726

Neighbor

gene id symbol gene type direction distance location
CI01000065_04672707_04680741 NA coding upstream 1838 4672639 ~ 4681582 (+)
CI01000065_04578385_04586426 ECHDC1 coding upstream 96966 4577840 ~ 4586454 (+)
CI01000065_04561164_04574594 NA coding upstream 108764 4561118 ~ 4574656 (+)
CI01000065_04547859_04555579 SOGA3 coding upstream 127841 4547859 ~ 4555579 (+)
CI01000065_04520939_04539169 ELOVL4, ELOVL4A coding upstream 144159 4520848 ~ 4539261 (+)
CI01000065_04723206_04763909 NA coding downstream 35480 4723206 ~ 4763975 (+)
CI01000065_04775143_04786346 NA coding downstream 83411 4771137 ~ 4786876 (+)
CI01000065_04790849_04819273 MACF1B coding downstream 101853 4789579 ~ 4819537 (+)
CI01000065_04844180_04849353 NA coding downstream 156454 4844180 ~ 4849831 (+)
CI01000065_04851961_04862931 CYTH1, CYTH2 coding downstream 164235 4851961 ~ 4863003 (+)
G270001 NA non-coding upstream 157206 4515754 ~ 4526214 (+)
G270062 NA non-coding upstream 170812 4502213 ~ 4512608 (+)
G269999 NA non-coding upstream 178301 4500293 ~ 4505119 (+)
G269967 NA non-coding upstream 303918 4376057 ~ 4379502 (+)
G269966 NA non-coding upstream 312226 4370806 ~ 4371194 (+)
G270090 NA non-coding downstream 22283 4710009 ~ 4714110 (+)
G270054 NA non-coding downstream 95143 4782869 ~ 4784552 (+)
G270098 NA non-coding downstream 137061 4824787 ~ 4825329 (+)
G270100 NA non-coding downstream 140934 4828660 ~ 4828880 (+)
G270036 NA non-coding downstream 180746 4868472 ~ 4870254 (+)
G269225 NA other upstream 1130296 3552804 ~ 3553214 (+)
G269181 NA other upstream 1220492 3458957 ~ 3462928 (+)
G268805 NA other upstream 2045215 2608907 ~ 2638205 (+)
G268525 NA other upstream 2443422 2239159 ~ 2239998 (+)
G267577 NA other upstream 3600765 1082153 ~ 1082655 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021883 NA coding CM030130.1 CM030130.1 34981577 ~ 34983088 (+)