CI01000065_04844180_04849353


Basic Information

Item Value
gene id CI01000065_04844180_04849353
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4844180 ~ 4849831 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_04844180_04849353.mRNA
ATAACCTTGAAAAACCAGTTGCCTTTTGAACGTGTGGACATCAGTGCCTTCATCATGTCATTGTTCACACATGTTTTGGCCTGCCTTTTTGGCATTGGATCATGGGTGGCCATTAACGGGATGTGGGTGGAGCTGCCTCTGATTGTCAATGACATTCCTGAGGGTTGGTACCTGCCCTCTTATCTCACAATAATTATCCAGATGGCCAACATTGGCCCTCTCTTCATCACGCTCATGCACCGCTTCAGACCGGGCGTGCTGGACGAGCGGCCTGTTATCTACACAATTGTGACGGTCGGCGTGGTGGCCACCTTACTCCTGGCTTTCCTCTGGAACCTCACGGTTACTTTTGCAGATGGCAAACATAGTGCTGCCTTACTGTCCCTCAGCTTCCTGCTGTCTGTTGTGGACTGCACCTCGTCCGTCACCTTTTTACCCTTCATGATGCGTCTACAGCCTCAGTACCTCACCACCTACTTCATTGGAGAAGGTCTAAGCGGTCTGGTCCCAGCGCTGGTGGCTCTTATCCAAGGTGTAGGGGTGGTCCACTGTAAAAATGCAAGTGCTAATGCGAATGTTAGCATGGGGAACTTATCCTTCAATGGAGAACTAGAGGCACATTACCAGCCGGCCAACTTCTCCGCTCAGGGTTTCTTCCTTTTCCTCAGTGCAATGATGATGGTGTGCCTGGGCGCTTTCCTGTTACTCAATCTCCACCCAGCTGTGGCACGGGAACACAAGAGCAAAGGTTATATTGATGATTCTAAGCGGGTAGAGAAGATTGATATAAGTCAATCCCCGAACAGTGAAACTCCAGAACAGAGACCCATGCTGGATTTCCCAGAAGGCTCAGTGATAAAACAACGCAGTTCATTTGGAAAAGGAACCTACAGCAGAATAGAGCTGGTCTTCATTTTTGTAGTTCTGGCCTGGGTCAATGCATTGACCAATGCAGTCCTGCCCTCAGTCCAGTCTTACTCATGTTTGCCATATGGAAATCAAGCCTATCATCTTGCAGCCACTTTGTCCTCAGTTGCGAATCCAGTGGCATGCTTCATTGCCATGTTTGTACCAATCAGGTCTCTGGTGCTGATGGCGGTTCTGACAGTGACGGGCACCGGGTTTGGAGCGTATATAATGGCCATGGCAGCACTGAGCCCTTGCCCTCTGCTGATCAATCATGACCTCGGAGCAGCACTCATTGTCATAACCTGGGTCATATTCGTCCTCACTCTGTCCTATGTGAAGGTGATTATTGGAGTGATCCTGCGAGATGAAGGCCACAGCGCCCTCGTGTGGTGTGGAGCTGTGGTGCAGCTGGGCTCTATGTTAGGAGCCCTGTCGATGTTCCCTTTGGTTAGTGTTTATGGACTTTTCAAGTCAGGAGAACCCTGTAAAACCAAGTGTCCTAAATAAAAGCAATCATTATTCTGATAGATTCAGAGTAAAGCGAATTAATGCCACACAAGGTTGAATAATACACAGATATCTGACCACACGCATTTTTCCATTATACCTTTTTTTTTTTTTTTTTTTACATTTACTACTGTATTGTTCCAACAACTATTTTTCCTTTTGGTTGTCATTTAGTTCAAATTACTGTTACATCACAACAAAACAAGCTTCATAATCTGCTGTAATATCTGGCACTCCCTTACAGTTACAGTGTAACTTGTCAATTATAGCATTTTTGTTATATTTAAATGTTATACTTGATATGTTGTATTTTTAATATTTTATTGATGTCCGAGGTCATGTTTTTTTTTAAAGAATTGGACAATATTTATGATTTTAAGATATGATGCCTAATAGGTATAAAGCCTTGACAATCCTATTTCTTTCTTTTTTTTATTTGTATTTTTTATTTACAAGACTGTATGAAGTTTAGAAAAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14620 SLC52A3, RFT2; riboflavin transporter 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_04844180_04849353.mRNA True 1894 mRNA 0.44 3 4844180 4849831

Neighbor

gene id symbol gene type direction distance location
CI01000065_04790849_04819273 MACF1B coding upstream 24643 4789579 ~ 4819537 (+)
CI01000065_04775143_04786346 NA coding upstream 57304 4771137 ~ 4786876 (+)
CI01000065_04723206_04763909 NA coding upstream 80205 4723206 ~ 4763975 (+)
CI01000065_04684547_04687726 NA coding upstream 156454 4683420 ~ 4687726 (+)
CI01000065_04672707_04680741 NA coding upstream 162598 4672639 ~ 4681582 (+)
CI01000065_04851961_04862931 CYTH1, CYTH2 coding downstream 2130 4851961 ~ 4863003 (+)
CI01000065_04922540_04936873 NA coding downstream 72709 4922540 ~ 4937026 (+)
CI01000065_04942340_04946407 TFPT coding downstream 92045 4941876 ~ 4946407 (+)
G270100 NA non-coding upstream 15300 4828660 ~ 4828880 (+)
G270098 NA non-coding upstream 18851 4824787 ~ 4825329 (+)
G270054 NA non-coding upstream 59628 4782869 ~ 4784552 (+)
G270090 NA non-coding upstream 130070 4710009 ~ 4714110 (+)
G270001 NA non-coding upstream 317966 4515754 ~ 4526214 (+)
G270036 NA non-coding downstream 18641 4868472 ~ 4870254 (+)
G270110 NA non-coding downstream 37343 4887174 ~ 4887388 (+)
G270111 NA non-coding downstream 38027 4887858 ~ 4888057 (+)
G270113 NA non-coding downstream 38816 4888647 ~ 4888879 (+)
G269225 NA other upstream 1291056 3552804 ~ 3553214 (+)
G269181 NA other upstream 1381252 3458957 ~ 3462928 (+)
G268805 NA other upstream 2205975 2608907 ~ 2638205 (+)
G268525 NA other upstream 2604182 2239159 ~ 2239998 (+)
G267577 NA other upstream 3761525 1082153 ~ 1082655 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009662 zgc:91890 coding NC_007127.7 CM002900.2 5597600 ~ 5605341 (+)
bowfin (Amia calva) AMCG00021926 NA coding CM030130.1 CM030130.1 39420257 ~ 39423376 (-)