CI01000065_04942340_04946407 (TFPT)


Basic Information

Item Value
gene id CI01000065_04942340_04946407
gene name TFPT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4941876 ~ 4946407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_04942340_04946407.mRNA
ATATAAAATAGGCTAATACGTGCCTTGGTTGGATGCATCGATTAAATTATACATAGACGGAACTCATGAGGAGTAGCTACAAAAGACAGCTTCAGTATTTACAATAAAGTGACAGCATGTGTGGCTCTTTACAACATCACTAACTAAAGGTGAGTACAGAGCTGAATCTAATCCAATCATTACAACTGTTAAAAACAGAACAGTTTTTAATCATGTAAATTATATTAGCTTATTCATAAGCATTTCATACTGCAGAACAGAAACGACCCATGTGAGGTCACAGAAAGCTTGCTTATAGATTGTGCTTGAGCAGTAAGATTATTTCCATTCCAACTGAATATTGGGTGAAAGGTGCACTGAGCACTCTTACTGAATGCATGATGAATGCACTTTCCATCTGTTGAACAACACTTGTTGTTTAAGTAAGACAAAGCATCATTCTGTCTGTTCATGTGCTTCAGATGATGGAGGATTTCTCAGGTCTCGCTTTACCTCCACTGTTTGGGGGTCACATTCTGGAAGCAGAGCTGGAGACGGGCGGAGTGGAGCTGGGCCCCAGCGGCAGTGAGCTTCTGGATAATGATGGGCCCCCTTCCGGCTCCGGACAGGATGGGGAAGACGAGAGGAGAGAGCTTGACAAAAGAAAGTATCAAGCTCTCAGCAAGAGGTGCAAAGAGATTGAACAGGTAAACGAGAAGATTTTGGGACGCCTTCACCAGGTCCAAAGACTGACACGCCGACTGAGGAAAGAAAGGAGGTTCCTCATGAAGACTCTGGACTCGTATGGAGATGATTACAGGACGGCTCAGCTCACCATCCCACTAGAGGATGAAGGAAAGGCTTTAGATCCTGCTCTCGCTGGTGATGAAGATGGCTCTTCTCCAGCGTTCCCTCATCAGTCAGCAGGAGGACCCAAGAAAAAGAGGCACCGGGTTCCAAAGGACAGAGAGAGAGACGCACAG

Function

symbol description
tfpt Predicted to act upstream of or within apoptotic process. Orthologous to human TFPT (TCF3 fusion partner).

GO:

id name namespace
GO:0006915 apoptotic process biological_process

KEGG:

id description
K11670 TEPT, INO80F; TCF3 fusion partner

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_04942340_04946407.mRNA True 962 mRNA 0.45 4 4941876 4946407

Neighbor

gene id symbol gene type direction distance location
CI01000065_04922540_04936873 NA coding upstream 4850 4922540 ~ 4937026 (+)
CI01000065_04851961_04862931 CYTH1, CYTH2 coding upstream 78873 4851961 ~ 4863003 (+)
CI01000065_04844180_04849353 NA coding upstream 92045 4844180 ~ 4849831 (+)
CI01000065_04790849_04819273 MACF1B coding upstream 122339 4789579 ~ 4819537 (+)
CI01000065_04775143_04786346 NA coding upstream 155000 4771137 ~ 4786876 (+)
G270113 NA non-coding upstream 52997 4888647 ~ 4888879 (+)
G270111 NA non-coding upstream 53819 4887858 ~ 4888057 (+)
G270110 NA non-coding upstream 54488 4887174 ~ 4887388 (+)
G270036 NA non-coding upstream 71622 4868472 ~ 4870254 (+)
G270100 NA non-coding upstream 112996 4828660 ~ 4828880 (+)
G269225 NA other upstream 1388752 3552804 ~ 3553214 (+)
G269181 NA other upstream 1478948 3458957 ~ 3462928 (+)
G268805 NA other upstream 2303671 2608907 ~ 2638205 (+)
G268525 NA other upstream 2701878 2239159 ~ 2239998 (+)
G267577 NA other upstream 3859221 1082153 ~ 1082655 (+)

Expression


Co-expression Network