Gene
RNA
| Item | Value |
|---|---|
| gene id | G266937 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 44741 ~ 45034 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU302975 | True | 294 | lncRNA | 0.34 | 1 | 44741 | 45034 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_00008351_00023809 | NA | coding | upstream | 20403 | 8351 ~ 24338 (+) |
| CI01000065_00001128_00004874 | NA | coding | upstream | 39557 | 1128 ~ 5184 (+) |
| CI01000065_00268067_00268655 | NA | coding | downstream | 223033 | 268067 ~ 268788 (+) |
| CI01000065_00390457_00395371 | SALL3, SALL3A | coding | downstream | 345423 | 390457 ~ 396151 (+) |
| CI01000065_00408239_00434714 | NA | coding | downstream | 363114 | 408148 ~ 435407 (+) |
| CI01000065_00466096_00487259 | NA | coding | downstream | 420942 | 465976 ~ 487278 (+) |
| CI01000065_00491304_00503042 | NA | coding | downstream | 446114 | 491148 ~ 503458 (+) |
| G266931 | NA | non-coding | upstream | 4189 | 38213 ~ 40552 (+) |
| G266943 | NA | non-coding | upstream | 16811 | 27691 ~ 27930 (+) |
| G266933 | NA | non-coding | downstream | 103 | 45137 ~ 46078 (+) |
| G266951 | NA | non-coding | downstream | 1373 | 46407 ~ 46727 (+) |
| G266960 | NA | non-coding | downstream | 13624 | 58658 ~ 62916 (+) |
| G266965 | NA | non-coding | downstream | 20554 | 65588 ~ 66364 (+) |
| G266968 | NA | non-coding | downstream | 22990 | 68024 ~ 68257 (+) |
| G266932 | NA | other | upstream | 75 | 43038 ~ 44666 (+) |
| G267432 | NA | other | downstream | 737249 | 782283 ~ 782879 (+) |
| G267577 | NA | other | downstream | 1037119 | 1082153 ~ 1082655 (+) |
| G268525 | NA | other | downstream | 2194125 | 2239159 ~ 2239998 (+) |
| G268805 | NA | other | downstream | 2563873 | 2608907 ~ 2638205 (+) |
| G269181 | NA | other | downstream | 3413923 | 3458957 ~ 3462928 (+) |
