G266933


Basic Information

Item Value
gene id G266933
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 45137 ~ 46078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU302971
TAAAATCCTGCAGGCGCCCCTGACCAAAAATACCTGTAAAACATTTAAACAGATTAAAACGTTTTACAATTAATGTCAGCATTCTGTTTCTTGCCATATTTCATTTAATATGTTTACAATTACATGCTAATTTTTGCTGTAGCTTCTTTACTTTTGTGGTGTAGTGGTCTAAACCACTGAGCTGGTCAGCAGAAGGTTGCTGGTTCGATCTCCACAGCGTCTCCACCAGTGTGTCCTTGATCGAGACACTTTACTCCAGGTTACTCCACGGCAGGCACGTGCAGGGGGAGGGGTCTTTGGGGGCTCGAGCCCCTGCCCTTTTTCGAAATTTATCAAAAGTGCCCCTCTCAGACAAATAGCAATGATAATATTGTGGTCAATAAAACAAATGCATTTAAATGATAATTAACATGACAATGTGTACAACAGTAACGAATCGCTCAAAAGCTGAAAATTCCTGTTTATTTTTTACATACCCATCAGTGTGAGGCGTTTTGAACAGTCTGTTCAGGCTCTCGAGCATATATGGTAAAGCATAACTGTAAATAAATGTAAATGTGATTTTTGTAAATCCTTTTTTGTTAGTGTCTGGGGCACAAACACTCAATAAAGCTGCTTATTTCTTAAAGTTTACTTTTTCAAGGCACTACTATAATATAAATGCATTTATGCATTTATAATAAATACATTTCATACAGTTTCTATTTGGGATCATAAAGGGTTAGTTCACCCAAACATATAAATTCAGCCATTATTTACTCGTCTTCACGCTGTTCAATCCCTGCTGGTTTCTTTTCCCCACAAATGCCTCCGTCACCTTGTCTTGCAGGTCCTGCTCCGCCACAAAAGCTCTGCAGCAAACATACAGACATCAAGAATCAGAAAAGTGCTGTAATAACTGTTTAAATTACAATAATTAACCCGCTACTTCGTTTGGGGTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU302971 True 942 lncRNA 0.38 1 45137 46078

Neighbor

gene id symbol gene type direction distance location
CI01000065_00008351_00023809 NA coding upstream 20799 8351 ~ 24338 (+)
CI01000065_00001128_00004874 NA coding upstream 39953 1128 ~ 5184 (+)
CI01000065_00268067_00268655 NA coding downstream 221989 268067 ~ 268788 (+)
CI01000065_00390457_00395371 SALL3, SALL3A coding downstream 344379 390457 ~ 396151 (+)
CI01000065_00408239_00434714 NA coding downstream 362070 408148 ~ 435407 (+)
CI01000065_00466096_00487259 NA coding downstream 419898 465976 ~ 487278 (+)
CI01000065_00491304_00503042 NA coding downstream 445070 491148 ~ 503458 (+)
G266937 NA non-coding upstream 103 44741 ~ 45034 (+)
G266931 NA non-coding upstream 4585 38213 ~ 40552 (+)
G266943 NA non-coding upstream 17207 27691 ~ 27930 (+)
G266951 NA non-coding downstream 329 46407 ~ 46727 (+)
G266960 NA non-coding downstream 12580 58658 ~ 62916 (+)
G266965 NA non-coding downstream 19510 65588 ~ 66364 (+)
G266968 NA non-coding downstream 21946 68024 ~ 68257 (+)
G266969 NA non-coding downstream 23344 69422 ~ 69663 (+)
G266932 NA other upstream 471 43038 ~ 44666 (+)
G267432 NA other downstream 736205 782283 ~ 782879 (+)
G267577 NA other downstream 1036075 1082153 ~ 1082655 (+)
G268525 NA other downstream 2193081 2239159 ~ 2239998 (+)
G268805 NA other downstream 2562829 2608907 ~ 2638205 (+)
G269181 NA other downstream 3412879 3458957 ~ 3462928 (+)

Expression


Co-expression Network