XLOC_010397 (arnt)


Basic Information

Item Value
gene id XLOC_010397
gene name arnt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4570417 ~ 4610278 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020441
TTGGATCAGGGCAGGTTTTTAATCTGGAAAAAGTCAAAAGAGCACCAAGGAAGAAACAACTATCAAACGTCTCGAGGATACCGCACAAGCTGAACGAGAAAATGACAGCATGTTTAAGGTCATGACATcggtttaaaaacacttttaaagagACTCTATCGGAGTGAAGAGAAGCTAACATCGGAGCGGGAGCGGAGGTTTTCCCTCAGCTGCTGGGAAACTAGTTTCGTTTATGTTTGTTAATCTAAACACCTTTGCCTGTCGGACATGACATCAGCTAATCCGGaTATGTCTGAGGTCCCGTCTCTGGCCATGACCTCCTCTAATGGATCTCATTCCAACGGTGTGCAAAAAGCCAACAAACGGCAAGCCACATCCGACTATGAGGACGATGAAGGAGGCAAATTATTCAGGTGTGACGATGATGGAGGCGGATCAAATGACAAGGAGAGATTTGCCAGGGAGAACCACAGTGAGATCGAGCGCCGGCGGAGGAATAAAATGACCGCCTACATCACAGAGCTGTCGGATATGGTGCCCGCCTGCAGCGCTCTGGCACGAAAACCAGACAAACTCACTATCCTGCGCATGGCCGTATCACACATGAAGTCTCTAAGAGGAACTGGAAACACCAGCACCGATGGCACCTATAAACCATCCTTTCTCACAGACCAGGAGCTGAAGCATCTGATTCTGGAGGCAGCTGATGGTTTTCTCTTTGTCGTGTCGTGCGAGACTGGTCGCGTTGTTTACGTGTCGGATTCTGTAACGCCGGTTTTAAACCAGGCTCAGTCAGACTGGCTGGGATCTTCACTATATGATCAGCTTCATCCAGACGATGTGGAGAAGCTCAGAGAGCAGCTTTCCACCACCGAGAACAATAACAACAGCGGCCGGATGTTGGATATGAAAACGGGCACGGTGAAGAAGGAGGGTGGTCAGGCGACTGTGAGGATGAGTATGGGTGCCAGGCGCTCCTTCATCTGCAGAATGAGgtgtGGAGTGTGTCCAGTAGAGCCCGTGTCTCTTAACAGACTGAACTTCCTGAGGACCAGAAACAGGAACGGATTGGGTTCTGCTAAAGACGGCGAGCAGCAGTATGTGGTTGTCCACTGCACAGGCTACATCAGATCTTGGCCTCCTGCAGGAATGAACCTGTCTGAGGAGGAGGCTGATAATAATCAGGGAAATCGTTTCTGTCTAGTTGCCATCGGAAGGCTACAGGTCACCTGTTGCCCGAGCGACACAAGCATAAACAACATCAGCGTTCCAGTGGAGTTCATCTCCCGCCACAATTCTCAGGGTGTCTACACGTTTGTGGATCACCGCTGTACGGCCACGGTGGGCTTCCAGACTCAGGAGTTGCTGGGGAAGAATATTCTGGATTTCGCACACCCAGAAGACCAGGGTTTACTGCGAGACAGCCTTCAGCAGGTGGTGAAGCTGCGAGGTCAGGTGATGTCGGTGATGTTTCGCTTCCAGTCTAAAAGCCGCGAGTGGGTCTGGATGAGGACGAGCTCCTTCACCTTCCAGAACCCTTTCTCTGAGGAGATCGAGTACATCATCTGCACCAACACCAACGTCAATAGAGGGTCGAGCGAGGGCTCCGTGTCCCCTCTGTCATCCCCTTCACTGGGCCAGAGCCCAAACTGCCCCTCCACCCCCAGCCCAGGCTGCGTCACGGTCAGGCAGTTGCAGCAGCAGCAGGTGGAGTTGGATGGAGGAGGAATGAGCCAGGAAGCACCCTATGAAAACAGCCAGGTCACTCTTCCTCAGGTTTCAGTGCAGACCTGTGGTGTAGTCAGTGCTGATCACAgCTCTAAGGCTGTTTCCTCCAGTGTATCCAGTGGGCAGCAGGTTTACCCACCAGCAGCAGCTTTCCCCAGCCCTGCACGACCCACTGAAACtttcagGTCCCCTGTTCTGCCGCAGCAGATGGTGTCCGTGGCTCATTCAGCGGGTCAGATGTTGGCTCAGATGTCCCGGCAGAGCACTCCGTCTGGGGTCTCCGGCTCCAACAACAGCCCCATTCAGGCCCCATCGGGACCCACAGCACCCCCTGGACTCTGGAGTACCACACGGCAACCCTTCAGCACACAGCAGGTTGCAGGTCCAATTGGAAAGAACCAGTCTGCTCCGTTTAACATGGGAGGCTTTAGCTCCGCCTCTGCACCCTCCACTTCCTCTTCCTTTGGCCAGATGGGCGGAGCCTCGGCTTCAATGGCAAGCACATCCAGCTACCAGCAAATAAACAGTCACAGCAACCCCTCCACTAATGGATACGGTGATGTTGGTCAGATGGCAGCAGCGTTTGGCTCCAGGCCAGCAGAGGGCGTCACAGGCTGGCAGCAGTGGcccagtcagacacacacacaagcctccgcagacacacaagtgcaaaACAACCAGACAGACATATTTCCGGTGAGTGGAGCAAACGTCAAGTCAAATTGAGCTGGGTTCGGGTTTAGTGTTACATAGTTTCAGAACAGTAcgatttttcctttatttttttaaggggaCCTATTTTGCCCTTttgt
>TCONS_00020442
ACTGGAAGATTACACGCGCCATCTTGGATCAGGGCAGGTTTTTAATCTGGAAAAAGTCAAAAGAGCACCAAGGAAGAAACAACTATCAAACGTCTCGAGGATACCGCACAAGCTGAACGAGAAAATGACAGCATGTTTAAGGTCATGACATcggtttaaaaacacttttaaagagACTCTATCGGAGTGAAGAGAAGCTAACATCGGAGCGGGAGCGGAGGTTTTCCCTCAGCTGCTGGGAAACTAGTTTCGTTTATGTTTGTTAATCTAAACACCTTTGCCTGTCGGACATGACATCAGCTAATCCGGaTATGTCTGAGGTCCCGTCTCTGGCCATGACCTCCTCTAATGGATCTCATTCCAACGGTGTGCAAAAAGCCAACAAACGGCAAGCCACATCCGACTATGAGGACGATGAAGGAGGCAAATTATTCAGGTGTGACGATGATGGAGGCGGATCAAATGACAAGGAGAGATTTGCCAGGGAGAACCACAGTGAGATCGAGCGCCGGCGGAGGAATAAAATGACCGCCTACATCACAGAGCTGTCGGATATGGTGCCCGCCTGCAGCGCTCTGGCACGAAAACCAGACAAACTCACTATCCTGCGCATGGCCGTATCACACATGAAGTCTCTAAGAGGAACTGGAAACACCAGCACCGATGGCACCTATAAACCATCCTTTCTCACAGACCAGGAGCTGAAGCATCTGATTCTGGAGGCAGCTGATGGTTTTCTCTTTGTCGTGTCGTGCGAGACTGGTCGCGTTGTTTACGTGTCGGATTCTGTAACGCCGGTTTTAAACCAGGCTCAGTCAGACTGGCTGGGATCTTCACTATATGATCAGCTTCATCCAGACGATGTGGAGAAGCTCAGAGAGCAGCTTTCCACCACCGAGAACAATAACAACAGCGGCCGGATGTTGGATATGAAAACGGGCACGGTGAAGAAGGAGGGTGGTCAGGCGACTGTGAGGATGAGTATGGGTGCCAGGCGCTCCTTCATCTGCAGAATGAGgtgtGGAGTGTGTCCAGTAGAGCCCGTGTCTCTTAACAGACTGAACTTCCTGAGGACCAGAAACAGGAACGGATTGGGTTCTGCTAAAGACGGCGAGCAGCAGTATGTGGTTGTCCACTGCACAGGCTACATCAGATCTTGGCCTCCTGCAGGAATGAACCTGTCTGAGGAGGAGGCTGATAATAATCAGGGAAATCGTTTCTGTCTAGTTGCCATCGGAAGGCTACAGGTCACCTGTTGCCCGAGCGACACAAGCATAAACAACATCAGCGTTCCAGTGGAGTTCATCTCCCGCCACAATTCTCAGGGTGTCTACACGTTTGTGGATCACCGCTGTACGGCCACGGTGGGCTTCCAGACTCAGGAGTTGCTGGGGAAGAATATTCTGGATTTCGCACACCCAGAAGACCAGGGTTTACTGCGAGACAGCCTTCAGCAGGTGGTGAAGCTGCGAGGTCAGGTGATGTCGGTGATGTTTCGCTTCCAGTCTAAAAGCCGCGAGTGGGTCTGGATGAGGACGAGCTCCTTCACCTTCCAGAACCCTTTCTCTGAGGAGATCGAGTACATCATCTGCACCAACACCAACGTCAAGCAGTTGCAGCAGCAGCAGGTGGAGTTGGATGGAGGAGGAATGAGCCAGGAAGCACCCTATGAAAACAGCCAGGTCACTCTTCCTCAGGTTTCAGTGCAGACCTGTGGTGTAGTCAGTGCTGATCACAGTAAGACTCCTCTctcacacatatgcatacactcACTGAAGACAACCCTCATTAAGAAGAGCTGAGGGatatgttcaacaaaaaaaaaaaa
>TCONS_00020443
CTTGGATCAGGGCAGGTTTTTAATCTGGAAAAAGTCAAAAGAGCACCAAGGAAGAAACAACTATCAAACGTCTCGAGGATACCGCACAAGCTGAACGAGAAAATGACAGCATGTTTAAGGTCATGACATcggtttaaaaacacttttaaagagACTCTATCGGAGTGAAGAGAAGCTAACATCGGAGCGGGAGCGGAGGTTTTCCCTCAGCTGCTGGGAAACTAGTTTCGTTTATGTTTGTTAATCTAAACACCTTTGCCTGTCGGACATGACATCAGCTAATCCGGaTATGTCTGAGGTCCCGTCTCTGGCCATGACCTCCTCTAATGGATCTCATTCCAACGGTGTGCAAAAAGCCAACAAACGGCAAGCCACATCCGACTATGAGGACGATGAAGGAGGCAAATTATTCAGGTGTGACGATGATGGAGGCGGATCAAATGACAAGGAGAGATTTGCCAGGGAGAACCACAGTGAGATCGAGCGCCGGCGGAGGAATAAAATGACCGCCTACATCACAGAGCTGTCGGATATGGTGCCCGCCTGCAGCGCTCTGGCACGAAAACCAGACAAACTCACTATCCTGCGCATGGCCGTATCACACATGAAGTCTCTAAGAGGAACTGGAAACACCAGCACCGATGGCACCTATAAACCATCCTTTCTCACAGACCAGGAGCTGAAGCATCTGATTCTGGAGGCAGCTGATGGTTTTCTCTTTGTCGTGTCGTGCGAGACTGGTCGCGTTGTTTACGTGTCGGATTCTGTAACGCCGGTTTTAAACCAGGCTCAGTCAGACTGGCTGGGATCTTCACTATATGATCAGCTTCATCCAGACGATGTGGAGAAGCTCAGAGAGCAGCTTTCCACCACCGAGAACAATAACAACAGCGGCCGGATGTTGGATATGAAAACGGGCACGGTGAAGAAGGAGGGTGGTCAGGCGACTGTGAGGATGAGTATGGGTGCCAGGCGCTCCTTCATCTGCAGAATGAGgtgtGGAGTGTGTCCAGTAGAGCCCGTGTCTCTTAACAGACTGAACTTCCTGAGGACCAGAAACAGGAACGGATTGGGTTCTGCTAAAGACGGCGAGCAGCAGTATGTGGTTGTCCACTGCACAGGCTACATCAGATCTTGGCCTCCTGCAGGAATGAACCTGTCTGAGGAGGAGGCTGATAATAATCAGGGAAATCGTTTCTGTCTAGTTGCCATCGGAAGGCTACAGGTCACCTGTTGCCCGAGCGACACAAGCATAAACAACATCAGCGTTCCAGTGGAGTTCATCTCCCGCCACAATTCTCAGGGTGTCTACACGTTTGTGGATCACCGCTGTACGGCCACGGTGGGCTTCCAGACTCAGGAGTTGCTGGGGAAGAATATTCTGGATTTCGCACACCCAGAAGACCAGGGTTTACTGCGAGACAGCCTTCAGCAGGTGGTGAAGCTGCGAGGTCAGGTGATGTCGGTGATGTTTCGCTTCCAGTCTAAAAGCCGCGAGTGGGTCTGGATGAGGACGAGCTCCTTCACCTTCCAGAACCCTTTCTCTGAGGAGATCGAGTACATCATCTGCACCAACACCAACGTCAAGTGAgtccaatcacacacacacacacacacgcactgttgtttaacaccacacacacaaacgcattaCATTCATGTGAACAATTagaacggtaacactttatttaaatggggTGTTTATAAGACATCTTTATAATCATGAATGAGGTGTTATGCATGCATATGACAGCTGTAATTAAGGATCTTTTGCtcaatttttgtctttttaaatgcaaagatgatatcGTTTGTTATGACAACATGACAAATACATCACTACCGGTCTTCTTCATCAGGACAACTTGAAATTACCAAGACATCAAGACTTGTCATAAATCTTAAAtaatcataaacatgattgtcatgaaccat
>TCONS_00020444
TTGGATCAGGGCAGGTTTTTAATCTGGAAAAAGTCAAAAGAGCACCAAGGAAGAAACAACTATCAAACGTCTCGAGGATACCGCACAAGCTGAACGAGAAAATGACAGCATGTTTAAGGTCATGACATcggtttaaaaacacttttaaagagACTCTATCGGAGTGAAGAGAAGCTAACATCGGAGCGGGAGCGGAGGTTTTCCCTCAGCTGCTGGGAAACTAGTTTCGTTTATGTTTGTTAATCTAAACACCTTTGCCTGTCGGACATGACATCAGCTAATCCGGaTATGTCTGAGGTCCCGTCTCTGGCCATGACCTCCTCTAATGGATCTCATTCCAACGGTGTGCAAAAAGCCAACAAACGGCAAGCCACATCCGACTATGAGGACGATGAAGGAGGCAAATTATTCAGGTGTGACGATGATGGAGGCGGATCAAATGACAAGGAGAGATTTGCCAGGGAGAACCACAGTGAGATCGAGCGCCGGCGGAGGAATAAAATGACCGCCTACATCACAGAGCTGTCGGATATGGTGCCCGCCTGCAGCGCTCTGGCACGAAAACCAGACAAACTCACTATCCTGCGCATGGCCGTATCACACATGAAGTCTCTAAGAGGAACTGGAAACACCAGCACCGATGGCACCTATAAACCATCCTTTCTCACAGACCAGGAGCTGAAGCATCTGATTCTGGAGGCAGCTGATGGTTTTCTCTTTGTCGTGTCGTGCGAGACTGGTCGCGTTGTTTACGTGTCGGATTCTGTAACGCCGGTTTTAAACCAGGCTCAGTCAGACTGGCTGGGATCTTCACTATATGATCAGCTTCATCCAGACGATGTGGAGAAGCTCAGAGAGCAGCTTTCCACCACCGAGAACAATAACAACAGCGGCCGGATGTTGGATATGAAAACGGGCACGGTGAAGAAGGAGGGTGGTCAGGCGACTGTGAGGATGAGTATGGGTGCCAGGCGCTCCTTCATCTGCAGAATGAGgtgtGGAGTGTGTCCAGTAGAGCCCGTGTCTCTTAACAGACTGAACTTCCTGAGGACCAGAAACAGGAACGGATTGGGTTCTGCTAAAGACGGCGAGCAGCAGTATGTGGTTGTCCACTGCACAGGCTACATCAGATCTTGGCCTCCTGCAGGAATGAACCTGTCTGAGGAGGAGGCTGATAATAATCAGGGAAATCGTTTCTGTCTAGTTGCCATCGGAAGGCTACAGGTCACCTGTTGCCCGAGCGACACAAGCATAAACAACATCAGCGTTCCAGTGGAGTTCATCTCCCGCCACAATTCTCAGGGTGTCTACACGTTTGTGGATCACCGCTGTACGGCCACGGTGGGCTTCCAGACTCAGGAGTTGCTGGGGAAGAATATTCTGGATTTCGCACACCCAGAAGACCAGGGTTTACTGCGAGACAGCCTTCAGCAGGTCTGTCTATCCGAATACAATCACTATCTCCATCTAGCCATTTCTTAgctatttattttgttatgtttacACGTGAACTAGTCTTTTCACAGTGTAGTCTTACACCGTGTCCTAGTACTGTATGTGCCAAAGCGTGATAAAAGCCATCTTTCTCATATTAAACTACTCTGAACTGAACTCTGAACACTGCACTGATACAGTTTCAGTTTATTAGAACTGCTATATTAAGCTCCTTTGACACTCTTCATTGCAAAGGCGCTATAGAAATAtagatgaaatattaaaaatgagtttttatCCTGGCCATCTGTGCCAGCGATGTAGGAAATTTCTTATTTAGAAATGCTTTTCCATGACGTTGCAGCAGAAcaacaattcaattcatctttatttttctagcgcttttacaatgtagattgtgtcaaagcagcctaacatagaagttcaattgaaactgcgtcagtccagtgttcagagttgaagatcagttcagtgtggtttattttcactgctgaaagtctaaacactgaggagcaaatccatcggtGTTAACTCAACAAGACCCagaccaagcaagccagtggcgaggaacaagcttcaccaattgaccaaagtgaaaaaaaaaa

Function

symbol description
arnt Enables sequence-specific DNA binding activity. Acts upstream of or within positive regulation of transcription, DNA-templated; response to toxic substance; and response to xenobiotic stimulus. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human ARNT (aryl hydrocarbon receptor nuclear translocator).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009636 response to toxic substance biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko00540 Lipopolysaccharide biosynthesis
ko04066 HIF-1 signaling pathway
ko05200 Pathways in cancer
ko05207 Chemical carcinogenesis - receptor activation
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05211 Renal cell carcinoma
ko04934 Cushing syndrome
ko01503 Cationic antimicrobial peptide (CAMP) resistance
ko01005 Lipopolysaccharide biosynthesis proteins
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-060126-7 Enables sequence-specific DNA binding activity. Acts upstream of or within positive regulation of transcription, DNA-templated; response to toxic substance; and response to xenobiotic stimulus. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human ARNT (aryl hydrocarbon receptor nuclear translocator).

Ensembl:

ensembl_id ENSDARG00000021855

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020441 False 2540 mRNA 0.53 20 4570417 4610255
TCONS_00020442 False 1828 mRNA 0.50 15 4576078 4610278
TCONS_00020443 False 1935 mRNA 0.48 13 4581022 4610256
TCONS_00020444 True 2060 mRNA 0.47 12 4583167 4610255

Neighbor

gene id symbol gene type direction distance location
XLOC_010396 NA coding downstream 11920 4554071 ~ 4558497 (-)
XLOC_010395 mrpl51 coding downstream 23224 4540981 ~ 4547193 (-)
XLOC_010393 ppp1r8b coding downstream 38760 4513597 ~ 4531657 (-)
XLOC_010394 BX927222.1 coding downstream 42770 4527481 ~ 4527647 (-)
XLOC_010392 vegfaa coding downstream 252538 4287542 ~ 4317879 (-)
XLOC_010398 cyp4t8 coding upstream 5383 4615661 ~ 4640578 (-)
XLOC_010399 NA coding upstream 75385 4685663 ~ 4695623 (-)
XLOC_010400 smpdl3b coding upstream 100699 4710977 ~ 4721629 (-)
XLOC_010401 rpa2 coding upstream 136310 4746588 ~ 4770233 (-)
XLOC_010402 tpbgb coding upstream 224249 4834527 ~ 4836218 (-)
XLOC_010626 CR392024.2 misc upstream 16284834 20895112 ~ 20895175 (-)
XLOC_010391 CU469524.2 non-coding downstream 302681 4234727 ~ 4267736 (-)
XLOC_010390 CU469524.1 non-coding downstream 358482 4210477 ~ 4211935 (-)
XLOC_010388 NA non-coding downstream 390450 4179036 ~ 4179967 (-)
XLOC_010404 LO018201.1 non-coding upstream 451221 5061499 ~ 5061629 (-)
XLOC_010405 CU694364.1 non-coding upstream 497020 5107298 ~ 5107417 (-)
XLOC_010408 NA non-coding upstream 559497 5169775 ~ 5173443 (-)
XLOC_010409 NA non-coding upstream 842902 5453180 ~ 5588620 (-)

Expression


Co-expression Network