XLOC_010399


Basic Information

Item Value
gene id XLOC_010399
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4685663 ~ 4695623 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020448
ATGCATCATTTATTAAATCCAGTCAAATGCTTTGCTCTTGCCTTGAAGCATATTTAAGTCAGAAGGGTTGATGGGAGCCGCTAGCATTTTCACTAGGACACATTCAGCTCCCACCTGAGGAAGATCCAGAGACTCCAACCTGTCAATCATGCAGGAAACCGGACTTTCCCTGAGAGCCTTGTGTCGACTGCTGGGCTTTGACGGGGCAGTTTGCCACCATATGTGCGACACTTTGGCAGAAATGGCATCTTTTGGGTTGGGGAGGAAGTTTGCACTCCTTGGCGTGGTGGTCCAGACCGCCACAGTTGTAGCACCTGCGGAAACAATGCAAGAATTTCCACATTAATAAAGAAGTACAgatgaaatcaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020448 True 371 lncRNA 0.47 2 4685663 4695623

Neighbor

gene id symbol gene type direction distance location
XLOC_010398 cyp4t8 coding downstream 45085 4615661 ~ 4640578 (-)
XLOC_010397 arnt coding downstream 75385 4570417 ~ 4610278 (-)
XLOC_010396 NA coding downstream 127166 4554071 ~ 4558497 (-)
XLOC_010395 mrpl51 coding downstream 138470 4540981 ~ 4547193 (-)
XLOC_010393 ppp1r8b coding downstream 154006 4513597 ~ 4531657 (-)
XLOC_010400 smpdl3b coding upstream 15354 4710977 ~ 4721629 (-)
XLOC_010401 rpa2 coding upstream 50965 4746588 ~ 4770233 (-)
XLOC_010402 tpbgb coding upstream 138904 4834527 ~ 4836218 (-)
XLOC_010403 bckdhb coding upstream 318245 5013868 ~ 5105322 (-)
XLOC_010404 LO018201.1 coding upstream 365876 5061499 ~ 5061629 (-)
XLOC_010626 CR392024.2 misc upstream 16199489 20895112 ~ 20895175 (-)
XLOC_010394 BX927222.1 non-coding downstream 158016 4527481 ~ 4527647 (-)
XLOC_010391 CU469524.2 non-coding downstream 417927 4234727 ~ 4267736 (-)
XLOC_010390 CU469524.1 non-coding downstream 473728 4210477 ~ 4211935 (-)
XLOC_010388 NA non-coding downstream 505696 4179036 ~ 4179967 (-)
XLOC_010405 CU694364.1 non-coding upstream 411675 5107298 ~ 5107417 (-)
XLOC_010408 NA non-coding upstream 474152 5169775 ~ 5173443 (-)
XLOC_010409 NA non-coding upstream 757557 5453180 ~ 5588620 (-)
XLOC_010411 NA non-coding upstream 940663 5636286 ~ 5643738 (-)

Expression


Co-expression Network