XLOC_000104


Basic Information

Item Value
gene id XLOC_000104
gene name NA
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8694196 ~ 8702684 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000196
GAGAAGTGCAAGCACCGTTCGCTATGCAGACGTAAACTAACAGCTGTCGATGAGGCCGCCGCCGACAAACCACTTCGGCCGGGTTTAAACGCCACGGAGAACTTTTCCAGCGAACGTTAGAGCATCACAGCAGCGGTTTACGTGTTTTTGTGGCCATGGAGGAGAAGAAGGAGGAGGGGGAAGCGGAGATCCAGGAACACGGACCCGAGCACTGGTTCTCCAAATGGGAGCGGCAGTGCCTAGCCGAGGCCGAGCAGGAGGAACCGGCCGAGGAGGAGACCGATCAGAGCCAACAAAAACTCTGGCATCTTTTCCAAAACTCCGCCACCGCCGTCGCACAACTGTATAAAGATAGAGTATGTCAACAACAACAGGGCCTTTCCTTGTGGGTTCCCTTTCAAAATGCTGCAACTGCCGTCACTAACCTATACAAAGaGAGTGTTGATGCCCATCAGCGGAGTTATGAGCTGGGTATTCAGATAGGCCATCAGAGGAGAAATAAAGATGTCCTGGCGTGGGTGAAGAAACGGAGGCGGACTATTCGGCGTGAGGATCTTATCAGCTTCCTCTGTGGTAAAGCCCCACCGCCACGTAGCTCCAGGGCTCCGCCAAGACTTGCAATGGTGTCACCAAGCCGACCCACGCCCTCGGAGACGAGTTCATCTGTAGAAACTGACCTGCAGCCTTTCAGGGAGGCCATTGCCCTGCACGGTCTAAGTGGAGCCATGGCGAGTATCAGTATGCGCTCCGGAGCTCCAGGTTCACCTACACACCTGAGCGCCAGCTCCGCCCCCAGTCGCCGCAGAAACGGTCTCCACGACGTAGACCTCAACACTTTCATTGCCGAGGAGATGGCGCTCCACCTCGACAACGGAACTCGGAAACGAAGCTCCGCCCAGTGCAATGATGTCATAACAGACTCTCCCACTCACAAACGCAATAGGATGATCTGAGCTCTTAAGTAAACAGAAACAACACCATGCGTGAGAAAAAAAATGCCACTCCTCAGTCATCCTCCCATCTTTATTCAGACCAGGAAATAAAAGCAGCCAATAACAGTGCTCACCACAGCCCAGCACATCTCTGATTGGTCTACAGAGCCCTGTTGAGGTCATCGGTGGGAGACGGTGTTCAGTGCAGAGGCCTAAGTGCCCTTCCATAGGATCCTGTCGACAAACACACAACCCTCATTCACTATATTGCTGTGTgagttgattgtgtgtgtgtgtgtgtgtgagtgtgtgttattATGGCTGAACTGAGACGTGATCGAACGCAGGAACAAGAAAACATTTTTGTGTGCATGTTCGCAACATAATGAGCAACGTCTGTATGATTGCGTGTGTATACAAGTacttggtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgactgaTGAGTTTGTgttagagtgtgtttgtgtgtgtggtaccTGCCTCTTCCTCCAGCACCTGTCACTGCCCCAGCTCTCAGTTACCATGCTGCGGCTTTCAAAagcaacaaatgttttattttaatattattgacaatgtttttcatgacttttctttctctctcttttgttttgCCTTCTCTTAATTCTGCTCGAGCAGCAGGCACAAGTGCTGTGATGGCTATACATCCGCTGTCATGCACATCTCTCAATCATTTTTGAATCTCTTCAATAATTTCCCTTCGTTCTTCCTGAGCATCCATCTTCTTTTCATTCATCCTCTTTTGTCATTCTTCCCCAGCACCTTTATCTCCAGTGTAACATTATGTCATGTAAATACCTGTAGGTGCTGACATAGACTTGTGgtacatattgtaaaaaaaaaaaaaaaaaaagctgtgcagaGACCATTGAATTGTTAATGTACAATAATGATTCTTGCATTAAAGAAATCAAGCTTTTAACTA
>TCONS_00000197
GGAGAACTTTTCCAGCGAACGTTAGAGCATCACAGCAGCGGTTTACGTGTTTTTGTGGCCATGGAGGAGAAGAAGGAGGAGGGGGAAGCGGAGATCCAGGAACACGGACCCGAGCACTGGTTCTCCAAATGGGAGCGGCAGTGCCTAGCCGAGGCCGAGCAGGAGGAACCGGCCGAGGAGGAGACCGATCAGAGCCAACAAAAACTCTGGCATCTTTTCCAAAACTCCGCCACCGCCGTCGCACAACTGTATAAAGATAGAGTATGTCAACAACAACAGGGCCTTTCCTTGTGGGTTCCCTTTCAAAATGCTGCAACTGCCGTCACTAACCTATACAAAGaGAGTGTTGATGCCCATCAGCGGAGTTATGAGCTGGGTATTCAGATAGGCCATCAGAGGAGAAATAAAGATGTCCTGGCGTGGGTGAAGAAACGGAGGCGGACTATTCGGCGTGAGGATCTTATCAGCTTCCTCTGTGGTAAAGCCCCACCGCCACGTAGCTCCAGGGCTCCGCCAAGACTTGCAATGGTGTCACCAAGCCGACCCACGCCCTCGGAGACGAGTTCATCTGTAGAAACTGACCTGCAGCCTTTCAGGGAGGCCATTGCCCTGCACGGTGAGTGTGTTCGATGACATCCATTTCATTgagacttcacacagaaactaTTTATTGCAGAATGTCACAATTTTGAAACTGTAATAATTAAGGAGTAATATCTAATCGCATTGTAATGTTAATCTGTATCTGTGAATATTAAATAGGATAAAGGCTATTGGATTATGACGTCTGTGTGAATGATTTGCGTGGTGTCATGCATTACAGTCAAACACACGACACttgatgtttttaaatata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000012458

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000196 False 1906 mRNA 0.48 4 8694196 8702684
TCONS_00000197 True 856 lncRNA 0.48 3 8694291 8699111

Neighbor

gene id symbol gene type direction distance location
XLOC_000103 fscn1b coding upstream 23710 8662530 ~ 8670486 (+)
XLOC_000102 SLC29A4 coding upstream 83632 8601935 ~ 8610564 (+)
XLOC_000101 si:ch211-160d14.15 coding upstream 97181 8593560 ~ 8597015 (+)
XLOC_000100 NA coding upstream 103560 8587230 ~ 8590636 (+)
XLOC_000099 AL928650.4 coding upstream 108130 8579197 ~ 8586066 (+)
XLOC_000105 NA coding downstream 248190 8950874 ~ 8965939 (+)
XLOC_000106 NA coding downstream 264795 8967479 ~ 8976422 (+)
XLOC_000107 tlr2 coding downstream 281384 8984068 ~ 8988504 (+)
XLOC_000108 prkcba coding downstream 302035 9004719 ~ 9064912 (+)
XLOC_000109 BX004779.3 coding downstream 368640 9071324 ~ 9074479 (+)
XLOC_000098 AL928650.2 non-coding upstream 116922 8575307 ~ 8577274 (+)
XLOC_000097 NA non-coding upstream 119139 8573777 ~ 8575057 (+)
XLOC_000087 NA non-coding upstream 1019967 7672121 ~ 7674229 (+)
XLOC_000084 NA non-coding upstream 1181434 7512529 ~ 7512762 (+)
XLOC_000111 NA non-coding downstream 426702 9129386 ~ 9132490 (+)
XLOC_000116 BX323038.1 non-coding downstream 575162 9277846 ~ 9285351 (+)
XLOC_000120 NA non-coding downstream 1184271 9886955 ~ 9914630 (+)

Expression


Co-expression Network