XLOC_010400 (smpdl3b)


Basic Information

Item Value
gene id XLOC_010400
gene name smpdl3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4710977 ~ 4721629 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020449
TTGCATGTGGAAATGTATTCTGCTCAGCATTTTCATCGTCTTCGGTAGAAGTGACGCGCTGACAGGTTATTTCTGGCACATCTCAGACCTCCACTGGGACCCTTCATATGATTTATCCAGCAGCTCTCAGTCAAAGTGTGCTTCCAGCGGAGGCCGACCGACTCCACATGCAGGCCGATATGGAGATTATGTCTGCGACTCACCCTGGAGTCTGATCAACTCTTCCCTGACCGCCATGAGAGAGATCCTGCCCGATCCGGACTTCATCATGTGGACCGGAGATGATACTCCTCATGTTCCTGATGATCAGCTGGGAGAACAGGCTGTGCTCAGAATAATCGGCAACCTCACTAACATCATCAAGAGCACTTTTCCCAAAACCAAGGTGTATTCTGCAATGGGAAATCATGACTACCATCCAAAGAACCAAATGCCTCCAGCAAAAAGCACCATTTACGAGCAAACAGCAAACCTGTGGCGTGACTGGCTCCACACTGCCTCACAGGAAACCTTCAAAACAGGTGGATATTACACTGAAAAGCTGCTGAATCAGACTGGATTGAGAGTCATTGTCCTCAACACAAACCTTTATTATGATCAGAACAAACTGACAGAGAAAGTCAAAGATCCTGCAGATCAGTTCAGCTGGGCTGATAAAGTGCTTCAGGATGCGGCCAAAAATAACGAGAAGGTCTACCTCATTGGTCACGTTCCTCCAGGGCTGTTTGAGAAGAAGCGGGATAAAGGCTggttcagaaaagagtttaataAGCGCTACATTGAGCTCATCCAGAAGCACAGTGCTGTGATCATGGGCCAGTTCTTCGGGCATCACCACACCGACAGCTTCCGCATGTTTTACAACTCCAAAgGATCTCCAATAAGTGCGATGTACCTGACTCCTGGAGTTACGCCATGGATAACAACATTGCCTGGTGTGATCGATGGCGGAAACAATCCTGGAATACGCATCTTCGAGTATGACACAAAAACACTGCTTGTCAAGGACATCATCACCTACTACCTGAACCTGACATATGCAAACATTGCACGTGCGCGCTGGGAGAAGGAGTACCGCCTGACGGAGGCCTTTCGCGTGCCAGACGCCTCTCCAGCCTCCATGCACCGTGTGATGGAGCGGATTTCCAGTGAAAAGTGTTCCCTACAGAAGTACTTTGAGCTGAACTCGGTCAGCTACGACCTGTCGGAGTGTCACGCAGACTGCCGTGTGGATCATGTGTGTGCGCTGAGGGAAGTGGACTATGACGCCTATGAGAAGTGTGTGTTGAAGGAGGGAGGATCGTCCAATGCTCCGGTGCTGTTCATTTTGTTTCTTTCTCTAATGCTCAGTCTGTGGAGTCTCAATTGATCCTACTGactactttgtttttgtttttaaatagtagTTGATTAACTTAGCATTTAATATTCACATATATTTAATCAATTTGGGCCTGTTTTGGCACCTGGGGTTCACTCTTTATTGGTGAATCATGATTTGATACAATCATAAGTTGCtgtcatagcaacaggtctgTCAGTTCATATATTATTATGCATTTCATATAGACAGGATCAGATTTTAAAGAGTATTAGGTAACACTTTTTCTTGAAGGGGTTGCTCATAAGACTGCCAtaacacctttataatcatgacataacACGTCATGAATATGTATGAAATTTTATGCATGTTTCTGACAACTGTCAGTGTCAgtagctcagttatgtcattttaaat
>TCONS_00020450
CTCCACATGCAGGCCGATATGGAGATTATGTCTGCGACTCACCCTGGAGTCTGATCAACTCTTCCCTGACCGCCATGAGAGAGATCCTGCCCGATCCGGACTTCATCATGTGGACCGGAAACCAAGGTGTATTCTGCAATGGGAAATCATGACTACCATCCAAAGAACCAAATGCCTCCAGCAAAAAGCACCATTTACGAGCAAACAGCAAACCTGTGGCGTGACTGGCTCCACACTGCCTCACAGGAAACCTTCAAAACAGGTGGATATTACACTGAAAAGCTGCTGAATCAGACTGGATTGAGAGTCATTGTCCTCAACACAAACCTTTATTATGATCAGAACAAACTGACAGAGAAAGTCAAAGATCCTGCAGATCAGTTCAGCTGGGCTGATAAAGTGCTTCAGGATGCGGCCAAAAATAACGAGAAGGTCTACCTCATTGGTCACGTTCCTCCAGGGCTGTTTGAGAAGAAGCGGGATAAAGGCTggttcagaaaagagtttaataAGCGCTACATTGAGCTCATCCAGAAGCACAGTGCTGTGATCATGGGCCAGTTCTTCGGGCATCACCACACCGACAGCTTCCGCATGTTTTACAACTCCAAAgGATCTCCAATAAGTGCGATGTACCTGACTCCTGGAGTTACGCCATGGATAACAACATTGCCTGGTGTGATCGATGGCGGAAACAATCCTGGAATACGCATCTTCGAGTATGACACAAAAACACTGCTTGTCAAGGTAGGATGCCTCTACCAGAATTGCAA

Function

symbol description
smpdl3b Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3B (sphingomyelin phosphodiesterase acid like 3B).

GO:

id name namespace
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-132 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3B (sphingomyelin phosphodiesterase acid like 3B).

Ensembl:

ensembl_id ENSDARG00000010130

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020449 False 1741 mRNA 0.45 8 4710977 4721629
TCONS_00020450 True 773 processed_transcript 0.47 5 4712664 4719385

Neighbor

gene id symbol gene type direction distance location
XLOC_010399 NA coding downstream 15354 4685663 ~ 4695623 (-)
XLOC_010398 cyp4t8 coding downstream 70399 4615661 ~ 4640578 (-)
XLOC_010397 arnt coding downstream 100699 4570417 ~ 4610278 (-)
XLOC_010396 NA coding downstream 152480 4554071 ~ 4558497 (-)
XLOC_010395 mrpl51 coding downstream 163784 4540981 ~ 4547193 (-)
XLOC_010401 rpa2 coding upstream 24959 4746588 ~ 4770233 (-)
XLOC_010402 tpbgb coding upstream 112898 4834527 ~ 4836218 (-)
XLOC_010403 bckdhb coding upstream 292239 5013868 ~ 5105322 (-)
XLOC_010404 LO018201.1 coding upstream 339870 5061499 ~ 5061629 (-)
XLOC_010405 CU694364.1 coding upstream 385669 5107298 ~ 5107417 (-)
XLOC_010626 CR392024.2 misc upstream 16173483 20895112 ~ 20895175 (-)
XLOC_010394 BX927222.1 non-coding downstream 183330 4527481 ~ 4527647 (-)
XLOC_010391 CU469524.2 non-coding downstream 443241 4234727 ~ 4267736 (-)
XLOC_010390 CU469524.1 non-coding downstream 499042 4210477 ~ 4211935 (-)
XLOC_010408 NA non-coding upstream 448146 5169775 ~ 5173443 (-)
XLOC_010409 NA non-coding upstream 731551 5453180 ~ 5588620 (-)
XLOC_010411 NA non-coding upstream 914657 5636286 ~ 5643738 (-)

Expression


Co-expression Network