Gene
RNA
| Item | Value |
|---|---|
| gene id | G267722 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 512513 ~ 512750 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU303802 | True | 238 | lncRNA | 0.38 | 1 | 512513 | 512750 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_00444905_00447425 | NA | coding | downstream | 65088 | 444680 ~ 447425 (-) |
| CI01000065_00330696_00340165 | NA | coding | downstream | 171741 | 330592 ~ 340772 (-) |
| CI01000065_00253168_00255665 | NA | coding | downstream | 256803 | 252691 ~ 255710 (-) |
| CI01000065_00120723_00133111 | MBOAT1 | coding | downstream | 379402 | 120406 ~ 133111 (-) |
| CI01000065_00097164_00097583 | NA | coding | downstream | 414923 | 96904 ~ 97590 (-) |
| CI01000065_00563411_00579174 | MBPB, MBP | coding | upstream | 50098 | 562848 ~ 580083 (-) |
| CI01000065_00622545_00624625 | NA | coding | upstream | 109373 | 622123 ~ 624657 (-) |
| CI01000065_00768127_00769942 | NA | coding | upstream | 254822 | 767572 ~ 770151 (-) |
| CI01000065_00782736_00793467 | NT5C3A, NT5C3 | coding | upstream | 269986 | 782697 ~ 793467 (-) |
| CI01000065_00843437_00865598 | FOXO3, FOXO6 | coding | upstream | 330682 | 843432 ~ 865598 (-) |
| G267721 | NA | non-coding | downstream | 345 | 511694 ~ 512168 (-) |
| G267411 | NA | non-coding | downstream | 8032 | 504275 ~ 504481 (-) |
| G267339 | NA | non-coding | downstream | 74950 | 437334 ~ 437563 (-) |
| G267310 | NA | non-coding | downstream | 91353 | 420939 ~ 421160 (-) |
| G267294 | NA | non-coding | downstream | 99383 | 412902 ~ 413130 (-) |
| G267728 | NA | non-coding | upstream | 12129 | 524879 ~ 525584 (-) |
| G267739 | NA | non-coding | upstream | 35250 | 548000 ~ 549479 (-) |
| G267770 | NA | non-coding | upstream | 78792 | 591542 ~ 591749 (-) |
| G267771 | NA | non-coding | upstream | 81872 | 594622 ~ 598770 (-) |
| G267778 | NA | non-coding | upstream | 117454 | 630204 ~ 630439 (-) |
| CI01000065_00050903_00055774 | NA | other | downstream | 458126 | 50386 ~ 55774 (-) |
| G267024 | NA | other | downstream | 466426 | 43039 ~ 46087 (-) |
| G269348 | NA | other | upstream | 2795693 | 3304357 ~ 3312480 (-) |
| G269679 | NA | other | upstream | 3261130 | 3773880 ~ 3774294 (-) |
