XLOC_010403 (bckdhb)


Basic Information

Item Value
gene id XLOC_010403
gene name bckdhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5013868 ~ 5105322 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020456
ATGGTGACGTCAGCGCGCTTTTCCTGCACGGGTTCCAGCGCAATGGCGGCGACGCGGCTCTTCTTAAGAAGTTCGTGTGTGAAGTCTCGTTTAACGGGGTTCACTGGCGGAGTGCACGGTAGTTTGAGCTTAACACTGCTCAAACGGTCGCCGGACTGCACAGCCCAGCCGCGGGCGCAGAGGAGACATGCAGCGCACTTCACATACCAGCCCGACCCGGTGCCCACTCAGTACGGCCCAACACAGAAGATGAATTTGTTCCAGTCTGTGACCAGCGCCTTGGACAACACTCTGTCCATTGACCCGACCGCAGTCATCTTTGGGGAGGACGTGGCCTTTGGTGGAGTGTTTCGATGCACGGTCGGACTCCGAGATAAATACGGTAAGGACCGTGTGTTTAACACTCCACTGTGTGAGCAAGGCATTGTGGGATTTGGGATCGGAGCGGCTGCTGCCGGAGCCACCGCTATTGCAGAGATTCAGTTTGCCGACTACATTTTCCCAGCATTTGATCAGATTGTAAACGAAGCGGCGAAGTACCGCTACCGCTCAGGGAACATGTACGACTGTGGGAAGCTGACCATCAGATCTCCATGGGGCTGCGTGGGTCACGGATCGCTCTATCACTCCCAAAGCCCAGAGGCCTTCTTCGCTCACTGTCCTGGATTAAAGGTTGTAGTGCCGAGGGGTCCAGTCCAGGCCAAGGGTCTCCTATTGTCCTGCATCGAAGATAAAAACCCCTGCATCTTCTTTGAGCCCAAAATCCTGTACAGAGCAGCAGTGGAGCAGGTGCCGACAGAAGCCTATTACATTCCCTTGTCTCAGGCAGAGGTGCTGCAGGAGGGCAGTGATCTGACGCTGGTGGCCTGGGGGACTCAGATTCATGTGATGCGGGAGGTTGCAGCCATGGCTCAGGAAAAGCTGGGTGTCTCCTGTGAGCTCATCGACCTTCAGACCATCCTACCCTGGGACAAAGAGACCGTCTGCAAGTCGGTGATGAAGACGGGTCGTCTGCTCATCAGTCACGAGGCTCCAGTGACCGGAGGTTTCGCAGCGGAGATCAGCTCTGCGGTTCAGgagGAGTGTTTCCTCAACCTGGAGGCTCCCATCAGCAGGGTTTGTGGATATGATACACCTTTCCCTCACATCTTTGAGCCTTTCTACATCCCGGATAAGTGGAAGTGCTTTGAGGCCGTCAAGAGAATGATCAACTACTGAAACACAGgCAGCACAGATAAAGAACTGGCCTTCTTCATCTCTGATCAGACTGGTGACCTCACAGTGAACTCTTACTGTAGATGATGTCACTGGTCAGACATCATAAACATCCTTAATCATGTTTCTGAACACtatcgagtgtgtgtgtgtcacacgtGTACTGCTCTCCTGTCTCCACTGTTACCTGAGTTTCATCATCTCCATctagtttttttgttattaaactatacTGATTTTGTCTGTGAGTTGATAAATATACTGTGTGTTCACCAGAATGTTtgtaaaatcagttttaattcaataaaaaatctCTGAATGAGTTTCCCTGTTTACGGCTCGATGATTTCTTCAATGAAGCAAACGCGAAAAGTGGGAATCTAGTCACTTTTTTTTCaccacaggctcattctgaaagcgtagccctatatacatttctggagatcacgaattatatacccagaggtacgtatggctgcatttcgtattTAAAAACGCTacgtatgacgccattccttttcatgcttaccagctgaccgcttacctctgtgtgaaCGGCTTTTGTGCTGTTTTTCCAGTTGTCCAGTTACGTTGGCGGACGTGTGATGTGGAGCGGAGTTGACCTTGGTGACTGGGTTCGAATCTTGTGAAGAAACattccagaaagcgggtaggacacaaaataaaataagtaaataaccaaaaagtaaaatctaaaaaaacactgtcggttggctttag
>TCONS_00020455
ATGGTGACGTCAGCGCGCTTTTCCTGCACGGGTTCCAGCGCAATGGCGGCGACGCGGCTCTTCTTAAGAAGTTCGTGTGTGAAGTCTCGTTTAACGGGGTTCACTGGCGGAGTGCACGGTAGTTTGAGCTTAACACTGCTCAAACGGTCGCCGGACTGCACAGCCCAGCCGCGGGCGCAGAGGAGACATGCAGCGCACTTCACATACCAGCCCGACCCGGTGCCCACTCAGTACGGCCCAACACAGAAGATGAATTTGTTCCAGTCTGTGACCAGCGCCTTGGACAACACTCTGTCCATTGACCCGACCGCAGTCATCTTTGGGGAGGACGTGGCCTTTGGTGGAGTGTTTCGATGCACGGTCGGACTCCGAGATAAATACGGTAAGGACCGTGTGTTTAACACTCCACTGTGTGAGCAAGGCATTGTGGGATTTGGGATCGGAGCGGCTGCTGCCGGAGCCACCGCTATTGCAGAGATTCAGTTTGCCGACTACATTTTCCCAGCATTTGATCAGATTGTAAACGAAGCGGCGAAGTACCGCTACCGCTCAGGGAACATGTACGACTGTGGGAAGCTGACCATCAGATCTCCATGGGGCTGCGTGGGTCACGGATCGCTCTATCACTCCCAAAGCCCAGAGGCCTTCTTCGCTCACTGTCCTGGATTAAAGGTTGTAGTGCCGAGGGGTCCAGTCCAGGCCAAGGGTCTCCTATTGTCCTGCATCGAAGATAAAAACCCCTGCATCTTCTTTGAGCCCAAAATCCTGTACAGAGCAGCAGTGGAGCAGGTGCCGACAGAAGCCTATTACATTCCCTTGTCTCAGGCAGAGGTGCTGCAGGAGGGCAGTGATCTGACGCTGGTGGCCTGGGGGACTCAGATTCATGTGATGCGGGAGGTTGCAGCCATGGCTCAGGAAAAGCTGGGTGTCTCCTGTGAGCTCATCGACCTTCAGACCATCCTACCCTGGGACAAAGAGACCGTCTGCAAGTCGGTGATGAAGACGGGTCGTCTGCTCATCAGTCACGAGGCTCCAGTGACCGGAGGTTTCGCAGCGGAGATCAGCTCTGCGGTTCAGgagGAGTGTTTCCTCAACCTGGAGGCTCCCATCAGCAGGGTTTGTGGATATGATACACCTTTCCCTCACATCTTTGAGCCTTTCTACATCCCGGATAAGTGGAAGTGCTTTGAGGCCGTCAAGAGAATGATCAACTACTGAAACACAGGTGCGCTTTATCTGTCACATACACAACATGTGAATCCTGTGCAGTGCATTTTTTATCCGATTTTTTTGGcttaatctcaactgaaacataaagagagggcggggcatataGTAGCCCCTCCCCATTttaaaaaagcagccaatagtggTTTGTTTTATCAGTGCGAGTGCTTGATCATGCACATCAAATGAGAAGAGATATCAAATTGGgcgcggggcatgtcagacagaagagagcatttgattggagcATTTGAAGTATGATGTCAcaaaaattgtttattaatttaggcTGAAGTGACAAACTAGCTTCAGAttttctaaatgtaaatattgtcacTGTTTTCATGTCTCtctccggtgtgtgtgtgtgtgtgttttcacaggCAGCACAGATAAAGAACTGGCCTTCTTCATCTCTGATCAGACTGGTGACCTCACAGTGAACTCTTACTGTAGATGATGTCACTGGTCAGACATCATAAACATCCTTAATCATGTTTCTGAACACtatcgagtgtgtgtgtgtcacacgtGTACTGCTCTCCTGTCTCCACTGTTACCTGAGTTTCATCATCTCCATctagtttttttgttattaaactatacTGATTTTGTCTGTGAGTTGATAAATATACTGTGTGTTCACCAGAATGTTtgtaaaatcagttttaattcaataaaaaatctCTGAATGAGTTTCCCTGTTTACGGCTCGATGATTTCTTCAATGAAGCAAACGCGAAAAGTGGGAATCTAGTCACTTTTTTTTCaccacaggctcattctgaaagcgtagccctatatacatttctggagatcacgaattatatacccagaggtacgtatggctgcatttcgtattTAAAAACGCTacgtatgacgccattccttttcatgcttaccagctgaccgcttacctctgtgtgaaCGGCTTTTGTGCTGTTTTTCCAGTTGTCCAGTTACGTTGGCGGACGTGTGATGTGGAGCGGAGTTGACCTTGGTGACTGGGTTCGAATCTTGTGAAGAAACattccagaaagcgggtaggacacaaaataaaataagtaaataaccaaaaagtaaaatctaaaaaaacactgtcggttggctttag
>TCONS_00020458
ACGGGTTCCAGCGCAATGGCGGCGACGCGGCTCTTCTTAAGAAGTTCGTGTGTGAAGTCTCGTTTAACGGGGTTCACTGGCGGAGTGCACGGTAGTTTGAGCTTAACACTGCTCAAACGGTCGCCGGACTGCACAGCCCAGCCGCGGGCGCAGAGGAGACATGCAGCGCACTTCACATACCAGCCCGACCCGGTGCCCACTCAGTACGG

Function

symbol description
bckdhb Predicted to enable catalytic activity. Predicted to be involved in branched-chain amino acid catabolic process and response to nutrient. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human BCKDHB (branched chain keto acid dehydrogenase E1 subunit beta).

GO:

id name namespace
GO:0009083 branched-chain amino acid catabolic process biological_process
GO:0007584 response to nutrient biological_process
GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003824 catalytic activity molecular_function
GO:0003826 alpha-ketoacid dehydrogenase activity molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko00280 Valine, leucine and isoleucine degradation

ZFIN:

id description
ZDB-GENE-030124-2 Predicted to enable catalytic activity. Predicted to be involved in branched-chain amino acid catabolic process and response to nutrient. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human BCKDHB (branched chain keto acid dehydrogenase E1 subunit beta).

Ensembl:

ensembl_id ENSDARG00000014676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020456 False 1956 mRNA 0.50 11 5013868 5105322
TCONS_00020455 False 2341 mRNA 0.48 10 5013868 5105322
TCONS_00020458 True 209 mRNA 0.61 1 5105087 5105295

Neighbor

gene id symbol gene type direction distance location
XLOC_010402 tpbgb coding downstream 177650 4834527 ~ 4836218 (-)
XLOC_010401 rpa2 coding downstream 243635 4746588 ~ 4770233 (-)
XLOC_010400 smpdl3b coding downstream 292239 4710977 ~ 4721629 (-)
XLOC_010399 NA coding downstream 318245 4685663 ~ 4695623 (-)
XLOC_010398 cyp4t8 coding downstream 373290 4615661 ~ 4640578 (-)
XLOC_010405 CU694364.1 coding upstream 1976 5107298 ~ 5107417 (-)
XLOC_010406 ttk coding upstream 5133 5110455 ~ 5143176 (-)
XLOC_010407 dctn3 coding upstream 39810 5145132 ~ 5154032 (-)
XLOC_010408 NA coding upstream 64453 5169775 ~ 5173443 (-)
XLOC_010409 NA coding upstream 347858 5453180 ~ 5588620 (-)
XLOC_010626 CR392024.2 misc upstream 15789790 20895112 ~ 20895175 (-)
XLOC_010396 NA non-coding downstream 455371 4554071 ~ 4558497 (-)
XLOC_010394 BX927222.1 non-coding downstream 486221 4527481 ~ 4527647 (-)
XLOC_010391 CU469524.2 non-coding downstream 746132 4234727 ~ 4267736 (-)
XLOC_010390 CU469524.1 non-coding downstream 801933 4210477 ~ 4211935 (-)
XLOC_010411 NA non-coding upstream 530964 5636286 ~ 5643738 (-)
XLOC_010414 NA non-coding upstream 640986 5746308 ~ 5786042 (-)

Expression


Co-expression Network