Gene
RNA
| Item | Value |
|---|---|
| gene id | G267944 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 1079082 ~ 1079359 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU304049 | True | 278 | lncRNA | 0.49 | 1 | 1079082 | 1079359 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_01037474_01041412 | NA | coding | downstream | 37670 | 1037164 ~ 1041412 (-) |
| CI01000065_01017206_01031155 | NA | coding | downstream | 47404 | 1016696 ~ 1031678 (-) |
| CI01000065_00906591_00915144 | PRDM1, PRDM1A | coding | downstream | 163938 | 905392 ~ 915144 (-) |
| CI01000065_00869870_00870423 | MED18 | coding | downstream | 208659 | 868438 ~ 870423 (-) |
| CI01000065_00843437_00865598 | FOXO3, FOXO6 | coding | downstream | 213484 | 843432 ~ 865598 (-) |
| CI01000065_01103779_01119916 | SIM1, SIM1A | coding | upstream | 24185 | 1103544 ~ 1120757 (-) |
| CI01000065_01148241_01167007 | ASCC3 | coding | upstream | 68515 | 1147874 ~ 1167007 (-) |
| CI01000065_01173590_01277821 | ASCC3 | coding | upstream | 94156 | 1173515 ~ 1277821 (-) |
| CI01000065_01297837_01321136 | NA | coding | upstream | 218440 | 1297799 ~ 1321136 (-) |
| CI01000065_01373412_01382125 | NA | coding | upstream | 293915 | 1373274 ~ 1382947 (-) |
| G267926 | NA | non-coding | downstream | 42730 | 1036089 ~ 1036352 (-) |
| G267856 | NA | non-coding | downstream | 93013 | 825383 ~ 986069 (-) |
| G267863 | NA | non-coding | downstream | 199076 | 877790 ~ 880006 (-) |
| G267752 | NA | non-coding | downstream | 267767 | 810762 ~ 811315 (-) |
| G267853 | NA | non-coding | downstream | 280009 | 798855 ~ 799073 (-) |
| G267946 | NA | non-coding | upstream | 3639 | 1082998 ~ 1083361 (-) |
| G267997 | NA | non-coding | upstream | 251711 | 1331070 ~ 1331343 (-) |
| G268087 | NA | non-coding | upstream | 286617 | 1365976 ~ 1366304 (-) |
| G268095 | NA | non-coding | upstream | 372722 | 1452081 ~ 1463686 (-) |
| CI01000065_00782736_00793467 | NT5C3A, NT5C3 | other | downstream | 295421 | 782697 ~ 793467 (-) |
| CI01000065_00622545_00624625 | NA | other | downstream | 454425 | 622123 ~ 624657 (-) |
| CI01000065_00563411_00579174 | MBPB, MBP | other | downstream | 499055 | 562848 ~ 580083 (-) |
| CI01000065_00050903_00055774 | NA | other | downstream | 1024695 | 50386 ~ 55774 (-) |
| G267024 | NA | other | downstream | 1032995 | 43039 ~ 46087 (-) |
| G269348 | NA | other | upstream | 2229084 | 3304357 ~ 3312480 (-) |
| G269679 | NA | other | upstream | 2694521 | 3773880 ~ 3774294 (-) |
| CI01000065_03794501_03806693 | VEGFAA, VEGFA | other | upstream | 2713764 | 3793123 ~ 3806693 (-) |
