G268327


Basic Information

Item Value
gene id G268327
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1877092 ~ 1961775 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU304473
TGTGATTTAAAAAATCTTTTAGTTTTCATTTTATTCAAATTTAAAATATGTCCCAACTTTTCCAGAATTCGGGTTGTAAAGTCTGAACCTCGTTGTTGGTCCATCAGTTGATTTTTTTTTTTTAATTTCCATTGTTGATTTGAACAGCAAACAACTCTTACTGCACGCACCGCAACAGGCTTTTAAAAATGGTGGTTGAAATAAAATGCTGCGTAGGGTCAACCAATCAAAATGCTGCGTGAACTCAACCAATCAGCATGTTCAGCGCCCAAGTCCCTCCCCTGAAAGTTCCTGAACTTTGAAAAAGTACTACCTCGTGAGCAGGGACTTTCTGAGGGGGAAATTTTTACCTGGAACTTCATTTAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU304473 True 367 lncRNA 0.38 2 1877092 1961775

Neighbor

gene id symbol gene type direction distance location
CI01000065_01373412_01382125 NA coding downstream 494145 1373274 ~ 1382947 (-)
CI01000065_01297837_01321136 NA coding downstream 555956 1297799 ~ 1321136 (-)
CI01000065_01173590_01277821 ASCC3 coding downstream 599271 1173515 ~ 1277821 (-)
CI01000065_01148241_01167007 ASCC3 coding downstream 710085 1147874 ~ 1167007 (-)
CI01000065_01103779_01119916 SIM1, SIM1A coding downstream 756335 1103544 ~ 1120757 (-)
CI01000065_01982908_01987337 NA coding upstream 20628 1982403 ~ 1987488 (-)
CI01000065_02288372_02357728 GRIK3 coding upstream 326597 2288372 ~ 2357728 (-)
CI01000065_02358877_02366169 NA coding upstream 397078 2358853 ~ 2366169 (-)
CI01000065_02679973_02700843 NA coding upstream 718064 2679839 ~ 2701444 (-)
CI01000065_02820772_02829132 NA coding upstream 857937 2819712 ~ 2829132 (-)
G268333 NA non-coding downstream 7608 1869224 ~ 1869484 (-)
G268252 NA non-coding downstream 57378 1819455 ~ 1819714 (-)
G268237 NA non-coding downstream 119102 1757614 ~ 1757990 (-)
G268151 NA non-coding downstream 195872 1603462 ~ 1681220 (-)
G268095 NA non-coding downstream 413406 1452081 ~ 1463686 (-)
G268438 NA non-coding upstream 111710 2073485 ~ 2073707 (-)
G268460 NA non-coding upstream 117268 2079043 ~ 2080030 (-)
G268470 NA non-coding upstream 126580 2088355 ~ 2088746 (-)
G268471 NA non-coding upstream 128013 2089788 ~ 2090019 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 1093431 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 1252435 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 1297065 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 1822705 50386 ~ 55774 (-)
G267024 NA other downstream 1831005 43039 ~ 46087 (-)
G269348 NA other upstream 1346668 3304357 ~ 3312480 (-)
G269679 NA other upstream 1812105 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 1831348 3793123 ~ 3806693 (-)

Expression


Co-expression Network