Gene
RNA
| Item | Value |
|---|---|
| gene id | G268270 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 1972364 ~ 1974589 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU304412 | True | 580 | lncRNA | 0.45 | 3 | 1972364 | 1974589 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_01938179_01949512 | NA | coding | upstream | 21613 | 1938085 ~ 1950751 (+) |
| CI01000065_01867964_01868983 | NA | coding | upstream | 102551 | 1867788 ~ 1869813 (+) |
| CI01000065_01452148_01608735 | GRIK2 | coding | upstream | 363629 | 1452148 ~ 1608735 (+) |
| CI01000065_01076737_01078446 | NA | coding | upstream | 892776 | 1076737 ~ 1079588 (+) |
| CI01000065_00873636_00877487 | ATG5 | coding | upstream | 1094877 | 873636 ~ 877487 (+) |
| CI01000065_02222213_02282352 | NA | coding | downstream | 247440 | 2222029 ~ 2282432 (+) |
| CI01000065_02442834_02444552 | NA | coding | downstream | 467070 | 2441659 ~ 2445951 (+) |
| CI01000065_02562189_02562709 | NA | coding | downstream | 587600 | 2562189 ~ 2562738 (+) |
| CI01000065_02714893_02755256 | NA | coding | downstream | 738852 | 2713441 ~ 2755370 (+) |
| CI01000065_02770419_02775297 | NA | coding | downstream | 795460 | 2770049 ~ 2776165 (+) |
| G268274 | NA | non-coding | upstream | 11484 | 1956365 ~ 1960880 (+) |
| G268256 | NA | non-coding | upstream | 140730 | 1831429 ~ 1831634 (+) |
| G268222 | NA | non-coding | upstream | 193079 | 1776226 ~ 1779285 (+) |
| G268083 | NA | non-coding | upstream | 272411 | 1698719 ~ 1699953 (+) |
| G268016 | NA | non-coding | upstream | 560123 | 1404794 ~ 1412241 (+) |
| G268301 | NA | non-coding | downstream | 922 | 1975511 ~ 1982735 (+) |
| G268361 | NA | non-coding | downstream | 26482 | 2001071 ~ 2001301 (+) |
| G268367 | NA | non-coding | downstream | 32451 | 2007040 ~ 2007290 (+) |
| G268374 | NA | non-coding | downstream | 37950 | 2012539 ~ 2012950 (+) |
| G268392 | NA | non-coding | downstream | 59949 | 2034538 ~ 2034741 (+) |
| G267577 | NA | other | upstream | 889709 | 1082153 ~ 1082655 (+) |
| G267432 | NA | other | upstream | 1189485 | 782283 ~ 782879 (+) |
| G266932 | NA | other | upstream | 1927698 | 43038 ~ 44666 (+) |
| G268525 | NA | other | downstream | 264570 | 2239159 ~ 2239998 (+) |
| G268805 | NA | other | downstream | 634318 | 2608907 ~ 2638205 (+) |
| G269181 | NA | other | downstream | 1484368 | 3458957 ~ 3462928 (+) |
| G269225 | NA | other | downstream | 1578215 | 3552804 ~ 3553214 (+) |
