Gene
RNA
| Item | Value |
|---|---|
| gene id | G268460 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 2079043 ~ 2080030 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU304610 | True | 224 | lncRNA | 0.54 | 2 | 2079043 | 2080030 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_01982908_01987337 | NA | coding | downstream | 91555 | 1982403 ~ 1987488 (-) |
| CI01000065_01955024_01969974 | NA | coding | downstream | 108820 | 1952778 ~ 1970223 (-) |
| CI01000065_01911879_01931555 | HACE1, HACE1.L | coding | downstream | 147488 | 1911512 ~ 1931555 (-) |
| CI01000065_01373412_01382125 | NA | coding | downstream | 696096 | 1373274 ~ 1382947 (-) |
| CI01000065_01297837_01321136 | NA | coding | downstream | 757907 | 1297799 ~ 1321136 (-) |
| CI01000065_02288372_02357728 | GRIK3 | coding | upstream | 208342 | 2288372 ~ 2357728 (-) |
| CI01000065_02358877_02366169 | NA | coding | upstream | 278823 | 2358853 ~ 2366169 (-) |
| CI01000065_02679973_02700843 | NA | coding | upstream | 599809 | 2679839 ~ 2701444 (-) |
| CI01000065_02820772_02829132 | NA | coding | upstream | 739682 | 2819712 ~ 2829132 (-) |
| CI01000065_02940142_02940429 | NA | coding | upstream | 860024 | 2940054 ~ 2940813 (-) |
| G268438 | NA | non-coding | downstream | 5336 | 2073485 ~ 2073707 (-) |
| G268327 | NA | non-coding | downstream | 117268 | 1877092 ~ 1961775 (-) |
| G268333 | NA | non-coding | downstream | 209559 | 1869224 ~ 1869484 (-) |
| G268252 | NA | non-coding | downstream | 259329 | 1819455 ~ 1819714 (-) |
| G268470 | NA | non-coding | upstream | 8325 | 2088355 ~ 2088746 (-) |
| G268471 | NA | non-coding | upstream | 9758 | 2089788 ~ 2090019 (-) |
| G268680 | NA | non-coding | upstream | 147411 | 2227441 ~ 2227694 (-) |
| G268684 | NA | non-coding | upstream | 155023 | 2235053 ~ 2235271 (-) |
| G268679 | NA | non-coding | upstream | 159110 | 2239140 ~ 2239984 (-) |
| CI01000065_00782736_00793467 | NT5C3A, NT5C3 | other | downstream | 1295382 | 782697 ~ 793467 (-) |
| CI01000065_00622545_00624625 | NA | other | downstream | 1454386 | 622123 ~ 624657 (-) |
| CI01000065_00563411_00579174 | MBPB, MBP | other | downstream | 1499016 | 562848 ~ 580083 (-) |
| CI01000065_00050903_00055774 | NA | other | downstream | 2024656 | 50386 ~ 55774 (-) |
| G267024 | NA | other | downstream | 2032956 | 43039 ~ 46087 (-) |
| G269348 | NA | other | upstream | 1228413 | 3304357 ~ 3312480 (-) |
| G269679 | NA | other | upstream | 1693850 | 3773880 ~ 3774294 (-) |
| CI01000065_03794501_03806693 | VEGFAA, VEGFA | other | upstream | 1713093 | 3793123 ~ 3806693 (-) |
