XLOC_010407 (dctn3)


Basic Information

Item Value
gene id XLOC_010407
gene name dctn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5145132 ~ 5154032 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020463
CTTGCAACCGGTATGCGCGATTGAACCAGTGTgacataggttggtaattcccctatactGAAGAAACctttaactattgactttcatagtattttttcctactatggatgtctgtggttacaggttttcagcttttttcaaaatgtcttctattgagttcaacagaaaaaagaaaacacttgagggagagaaaatagtgtgtaaattttcattttttagtgaactatccctttaaatgctgtCTAATGATAATTAAATCAACTAAATGAAAACCCTGCTGGTACATCTTCCCATATAATCAAATGTTTTATCCTCAACTGACATTTACAGGACCAGAATGAAGACTTGTCTGCTGAAGTCAAAAGACTCTTTGAAGAGTACAATAAAATGATGTTTCTTCTGTCCAAACAGTTTTCACAGTGGGATGAAACTCTACGAACGCTGGAAGGACCCAAACAAGTCCAGCAGATTGATTAGGACCATAATGATTATGATGTCTTTCACTCTACTGACGCGTTTACTTATTACTGATGAAGAAAACAGCACTGTCATTCCCAAACATGCATTGGTAATGTGTTTAAAGTCCGCATTAAATCAAAATTtgcattgtttattttgttgccACCACATTGTCAGTCTTAAGGTGAACAATGAATCCGTGCAAATTAATccattaaattattttgttttggtaatcttgaatcaaaatctgaccatcTGCTTCTGCTTTGGAACAGCCGCATTTGTATGATGACATCAGGCTGAATCTGATTGGGCAGATCCTACTCAATATACAGCTGCAGTTGGAAATGCttcataaaactgaaataaaacaaatgcagatTTTAGATGTTTTGATGACGTCAGGTTGAATCTGACTCATTTTTGCTCTTCTATTTATTTAGTCCATCTCTTATGATGTGTGTATGAAGATGGCTACACTGCAAAGTTTCTCCTAAAAATACCTTAAGCAATGAAATAAAAGTTCGACTGTACTATATAA
>TCONS_00020464
GAACTTCCCCTAGCGTCATTTCCGGTGTGCAGAATTACTACAAGACAACAAAAATGGAAGAGAAAAGCAATCTGGAAGATCTGGACGCTCGTCTTCAGCTTCTCGAAAAACGCGTTTATGGAGAAAGAGGAGGAAAAAACGGCAAACCAGTGAAGTGTGCAGAATCCCTCACCCGGATCAGTGCAGCTCTGGCAAACACTGCCAACAAGAGAGAGCGCGTCAAGATCCTGCACAAGAAGATCGAAGATTTGCTGAAGTATTTGGACCCCCAGTTCACAGACTTCATCGCTGTGCCCGATTCAGTCAAACTGGAGTTTATTCTAGCTGagGAAGAGTTTCTGCGTTCACAAGCCGCATTACTCGAGCAAGTGCAGAATATGCAGCCTCTTCTGGACAGTAACCACATTAAAGCGGTTCCAGAGCTTACTACTAAAGTACAGCGGCTGTCACAAATACACATTCAACAGCAGGACCAGAATGAAGACTTGTCTGCTGAAGTCAAAAGACTCTTTGAAGAGTACAATAAAATGATGTTTCTTCTGTCCAAACAGTTTTCACAGTGGGATGAAACTCTACGAACGCTGGAAGGACCCAAACAAGTCCAGCAGATTGATTAGGACCATAATGATTATGATGTCTTTCACTCTACTGACGCGTTTACTTATTACTGATGAAGAAAACAGCACTGTCATTCCCAAACATGCATTGGTAATGTGTTTAAAGTCCGCATTAAATCAAAATTtgcattgtttattttgttgccACCACATTGTCAGTCTTAAGGTGAACAATGAATCCGTGCAAATTAATccattaaattattttgttttggtaatcttgaatcaaaatctgaccatcTGCTTCTGCTTTGGAACAGCCGCATTTGTATGATGACATCAGGCTGAATCTGATTGGGCAGATCCTACTCAATATACAGCTGCAGTTGGAAATGCttcataaaactgaaataaaacaaatgcagatTTTAGATGTTTTGATGACGTCAGGTTGAATCTGACTCATTTTTGCTCTTCTATTTATTTAGTCCATCTCTTATGATGTGTGTATGAAGATGGCTACACTGCAAAGTTTCTCCTAAAAATACCTTAAGCAATGAAATAAAAGTTCGACTGTACTATATAA
>TCONS_00020465
CCTAGCGTCATTTCCGGTGTGCAGAATTACTACAAGACAACAAAAATGGAAGAGAAAAGCAATCTGGAAGATCTGGACGCTCGTCTTCAGCTTCTCGAAAAACGCGTTTATGGAGAAAGAGGAGGAAAAAACGGCAAACCAGTGAAGTGTGCAGAATCCCTCACCCGGATCAGTGCAGCTCTGGCAAACACTGCCAACAAGAGAGAGCGCGTCAAGATCCTGCACAAGAAGATCGAAGATTTGCTGAAGTATTTGGACCCCCAGTTCACAGACTTCATCGCTGTGCCCGATTCAGTCAAACTGGAGTTTATTCTAGCTGagGAAGAGTTTCTGCGTTCACAAGCCGCATTACTCGAGCAAGTGCAGAATATGCAGCCTCTTCTGGACAGTAACCACATTAAAGCGGTTCCAGAGCTTACTACTAAAGTACAGCGGCTGTCACAAATACACATTCAACAGCAGGACCAGAATGAAGACTTGTCTGCTGAAGTCAAAAGACTCTTTGAAGAGTACAATAAAATGTTTTCACAGTGGGATGAAACTCTACGAACGCTGGAAGGACCCAAACAAGTCCAGCAGATTGATTAGGACCATAATGATTATGATGTCTTTCACTCTACTGACGCGTTTACTTATTACTGATGAAGAAAACAGCACTGTCATTCC
>TCONS_00020466
GAGAAAAGCAATCTGGAAGATCTGGACGCTCGTCTTCAGCTTCTCGAAAAACGCGTTTATGGAGAAAGAGGAGGAAAAAACGGCAAACCAGTGAAGTGTGCAGAATCCCTCACCCGGATCAGTGCAGCTCTGGCAAACACTGCCAACAAGAGAGAGCGCGTCAAGATCCTGCACAAGAAGAGTAAGAGAATTAGAAATCATCCAGTATTATGCATATCCAAAATATGGCTTGTTGCGTcatcattttgtcatcatttttcaATTTGTGTTTCCACTCAGTCGAAGATTTGCTGAAGTATTTGGACCCCCAGTTCACAGACTTCATCGCTGTGCCCGATTCAGTCAAACTGGAGTTTATTCTAGCTGagGAAGAGTTTCTGCGTTCACAAGCCGCATTACTCGAGCAAGTGCAGAATATGCAGCCTCTTCTGGACAGTAACCACATTAAAGCGGTTCCAGAGCTTACTACTAAAGTACAGCGGCTGTCACAAATACACATTCAACAGCAGGACCAGAATGAAGACTTGTCTGCTGAAGTCAAAAGACTCTTTGAAGAGTACAATAAAATGGTATCCTTACTTGCCGT

Function

symbol description
dctn3 Predicted to be involved in cytoskeleton-dependent cytokinesis. Predicted to be part of dynactin complex. Orthologous to human DCTN3 (dynactin subunit 3).

GO:

id name namespace
GO:0045446 endothelial cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048869 cellular developmental process biological_process
GO:0051094 positive regulation of developmental process biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process
GO:0005869 dynactin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko05132 Salmonella infection
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040704-65 Predicted to be involved in cytoskeleton-dependent cytokinesis. Predicted to be part of dynactin complex. Orthologous to human DCTN3 (dynactin subunit 3).

Ensembl:

ensembl_id ENSDARG00000041363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020463 False 1003 lncRNA 0.35 2 5145132 5146268
TCONS_00020464 False 1143 mRNA 0.40 7 5145132 5154032
TCONS_00020465 False 666 mRNA 0.45 7 5145580 5154024
TCONS_00020466 True 586 lncRNA 0.44 5 5145862 5153973

Neighbor

gene id symbol gene type direction distance location
XLOC_010406 ttk coding downstream 1956 5110455 ~ 5143176 (-)
XLOC_010405 CU694364.1 coding downstream 37715 5107298 ~ 5107417 (-)
XLOC_010403 bckdhb coding downstream 39810 5013868 ~ 5105322 (-)
XLOC_010404 LO018201.1 coding downstream 83503 5061499 ~ 5061629 (-)
XLOC_010402 tpbgb coding downstream 308914 4834527 ~ 4836218 (-)
XLOC_010408 NA coding upstream 15743 5169775 ~ 5173443 (-)
XLOC_010409 NA coding upstream 299148 5453180 ~ 5588620 (-)
XLOC_010410 CR848788.1 coding upstream 453106 5607138 ~ 5612480 (-)
XLOC_010411 NA coding upstream 482254 5636286 ~ 5643738 (-)
XLOC_010412 si:dkey-283b15.2 coding upstream 496463 5650495 ~ 5671862 (-)
XLOC_010626 CR392024.2 misc upstream 15741080 20895112 ~ 20895175 (-)
XLOC_010399 NA non-coding downstream 449509 4685663 ~ 4695623 (-)
XLOC_010396 NA non-coding downstream 586635 4554071 ~ 4558497 (-)
XLOC_010394 BX927222.1 non-coding downstream 617485 4527481 ~ 4527647 (-)
XLOC_010414 NA non-coding upstream 592276 5746308 ~ 5786042 (-)
XLOC_010416 BX957314.1 non-coding upstream 716541 5870573 ~ 5870689 (-)

Expression


Co-expression Network