XLOC_010408


Basic Information

Item Value
gene id XLOC_010408
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5169775 ~ 5173443 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022082
tctatctatctatctatctatctatctatctatctatctatctatctatctatctatctctatattGACATTTTTCTGCCGTGGTCAGTTTGCTCGTAGCTCACTTTGCATGCTGTTATGCTTCAGAGTGATCGCttttacaaaagaaataaaattaatgtaaaatcaaggtaaaactgcTCTTTTCTCTTACgtctgcttctgaaaacactattggttgggtttagggaagaattGAGCTCAATGATTCGCAAGCTGATCCATTTGACAAGCTATGCCTTCTCCTGGAGGCGTACATGATGAACGTTTGTCTGAAACGTACaataaaatgtaccctaagtaacaaGTTTTGGATTTGCACAAATGTaggcagcgccctctagtggatttgtcatctaaaacttacaacaaaatacacactaggtaacgtatttcagattcaacAAATGTAGACTGCACCTTCtattggatttgtcatctgaaacgtgcagcGAAACACAccataagtaacatatttcagattcatacaaatgtagacagcgccctctagtgaatttttgtcatctgaaacgtacgaCATAACACACCCTAAGTGACGTATTTAAGATCACACAAATGTAGactgtgccctctagtggatttgtcatctgaaacgtacaacaaatcACACACTATGTaatatatttcagatttgcacaaatgtaaaatgcgccctctagtggatttgtcatctgaaacgtgcagcgaaacacaccctaagtaacatatttcagattcgtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACtaggtaatgtatttcagatttgcacaaATGTAAAAAGCGCCCTCTagaggatttgtcatctgaaacgtgcagcGAAACACACCCTAAGTCACGTATTTCAGATTCGtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACATAACAcaccctaagtaatgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACTAGGTAATGTATTCCAGATTTGCACAAATGTAaaatgcgccctctagtggatttgtcatctgaaacgtgcagcGAAACACCCTAAGTCACGTATTTCAGATTCGTACAAATGTAGATAGCGCCctgtagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaaCATCGCACAAATGTAGactgcaccctctagtggattagtcatctgaaacgtgcaacgaaacacaccctaagtaacgtatatCAAATTCgcaaaaatatagacagcgccctctagtggatttgtaatctgaaacgtgcaacgaaACACACCTGTAGCAACATATTTAACGTTTCAGAAAAATGTAGACTGAGGCAAGTATTTACAATGAGTGAAACATAAAGAACTTTTGGACTCGACTATAATGAACAATGAAGACCATCTAATGTGACATGTTTTATTGGGACGTTTGTTTaacgtttttaaaatgttattacttATTTAGGAACgtaatgtttaacagaaatgTCTCTTAATGTGCATATaaccaatacatttttttaaagctgaaCAATTCAAACTGTCAGAGAACATTTTCTTGATGCTTAGTTGAGGATTAATTTACTTCCGCtataaaagaataaaagtttCCTGATAATCTACTCTCATCTTGTCATCCAAGATGTTAATTTCTGTCTCTTAATCAGtcgaaaataaataaaggttttgaggaaaacatgcaGAATTGTTGTCCAGATAGTGGACTTCTGTGGTGCCCAGTGGCACTTGTAGAAAGACTCCAGGATTATTGCTATAGTAAATGCAAATGTATGTGTCATCTACAGATTCTGTTGATTTACAATTGAATTGATATCCTCATAtctttagtttaaataaaatttcacaagTTTGATGCTATTTTTTGCCAGAGTTGTTTgtcattatacatatatatatatatatatat
>TCONS_00022083
CAATGCATAtctgtcatttgaaaacaaaagaaaatgggTCGTTGATGACAACTGCGTATTCAAAAGCACAATGTACAAAACTGCACATAATATACAACATTATAAAAAAGTCAAGACAAAACACGTGATATAGTTCAGGACTTTAGGAACTACTCAAaacgatgatgataataataatacaaggaAAACAATGATATGGAGCTTAGGACTTTATTTACGCACGATGCAATATTGCAGCTTCTTGCATGTTTCCAAAAGCTATTTTCAGGTGATGTTGCAATTTCCCAACCAGACTTATCATCTGTGATGATGTGGTATCAAAATATATGAATATGGATGCATGATTTATTGATCTCGGTCAAAATCTGCTATTAATGTCAGCTGATAATTCGCTGTCGATTATTTCTAAACCAGGCTGCAAACACTGTTTTTAAGACGACACACGAAACAACATGACTGTGTATGACGGTTTCTGGAAGCTGCATCTGTAATTCTGAGCCAATCCTCATGTTATTTGTGAAGTACCCACATAGATACatgcaaatatatgcaaatgacatatatgacatacaagttcatactTGGATTTTACGCACaacatatatgtcatatatgcaacaaaTATAGCATATATACTGAtcttataaaacaaatatgaatcaAATAACTCGCTCAATATGTTTGACAAATAAATGAGATAATGTGAGGGTTACAAGAACATGTATTGTAGAAAAAACGTGATGAATCAAACCTAAAATGTGCGATGGAAAATACATGCCTTAGACTACTTTTTTGTGAAACCGCAAAAAACGTACTTTAACAGACGTTTGACTGTAGTTTTAGGTAAAGTGAACACTAGGGGGCGGTATGATGACAAGAACATTAAtatcttttcacactaatgatatttacagagaCATTATTGATGATTAAAGGATTATTTTCGGGCAATTCACACATTAAACATTTCATTgctgtctatgatttgtaataaATACGTTTGGGTcacctatcatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctctatattGACATTTTTCTGCCGTGGTCAGTTTGCTCGTAGCTCACTTTGCATGCTGTTATGCTTCAGAGTGATCGCttttacaaaagaaataaaattaatgtaaaatcaaggtaaaactgcTCTTTTCTCTTACgtctgcttctgaaaacactattggttgggtttagggaagaattGAGCTCAATGATTCGCAAGCTGATCCATTTGACAAGCTATGCCTTCTCCTGGAGGCGTACATGATGAACGTTTGTCTGAAACGTACaataaaatgtaccctaagtaacaaGTTTTGGATTTGCACAAATGTaggcagcgccctctagtggatttgtcatctaaaacttacaacaaaatacacactaggtaacgtatttcagattcaacAAATGTAGACTGCACCTTCtattggatttgtcatctgaaacgtgcagcGAAACACAccataagtaacatatttcagattcatacaaatgtagacagcgccctctagtgaatttttgtcatctgaaacgtacgaCATAACACACCCTAAGTGACGTATTTAAGATCACACAAATGTAGactgtgccctctagtggatttgtcatctgaaacgtacaacaaatcACACACTATGTaatatatttcagatttgcacaaatgtaaaatgcgccctctagtggatttgtcatctgaaacgtgcagcgaaacacaccctaagtaacatatttcagattcgtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACtaggtaatgtatttcagatttgcacaaATGTAAAAAGCGCCCTCTagaggatttgtcatctgaaacgtgcagcGAAACACACCCTAAGTCACGTATTTCAGATTCGtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACATAACAcaccctaagtaatgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACTAGGTAATGTATTCCAGATTTGCACAAATGTAaaatgcgccctctagtggatttgtcatctgaaacgtgcagcGAAACACATCCTAAGTAACATTTCAGATTCGtacaaatgtagacagcgccctctagtggatttgtcattgaACCGTACGACAtaacacaccctaagtaacgtatttaagATCGCACAAATGTAgactgcgccctctagtggattagtcatctgaaacgtgcaacaaaataaacactaagtaatgtatttcagatttgcacaaatgtaaaatgcgccctctagtggatttgtcatttgaaacgtGCAGCGAAACACACCCTAAGTCACGTATTTCAGATTCGTACAAATGTAGATAGCGCCctgtagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaaCATCGCACAAATGTAGactgcaccctctagtggattagtcatctgaaacgtgcaacgaaacacaccctaagtaacgtatatCAAATTCgcaaaaatatagacagcgccctctagtggatttgtaatctgaaacgtgcaacgaaACACACCTGTAGCAACATATTTAACGTTTCAGAAAAATGTAGACTGAGGCAAGTATTTACAATGAGTGAAACATAAAGAACTTTTGGACTCGACTATAATGAACAATGAAGACCATCTAATGTGACATGTTTTATTGGGACGTTTGTTTaacgtttttaaaatgttattacttATTTAGGAACgtaatgtttaacagaaatgTCTCTTAATGTGCATATaaccaatacatttttttaaagctgaaCAATTCAAACTGTCAGAGAACATTTTCTTGATGCTTAGTTGAGGATTAATTTACTTCCGCtataaaagaataaaagtttCCTGATAATCTACTCTCATCTTGTCATCCAAGATGTTAATTTCTGTCTCTTAATCAGtcgaaaataaataaaggttttgaggaaaacatgcaGAATTGTTGTCCAGATAGTGGACTTCTGTGGTGCCCAGTGGCACTTGTAGAAAGACTCCAGGATTATTGCTATAGTAAATGCAAATGTATGTGTCATCTACAGATTCTGTTGATTTACAATTGAATTGATATCCTCATAtctttagtttaaataaaatttcacaagTTTGATGCTATTTTTTGCCAGAGTTGTTTgtcattatacatatatatatatatatatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022082 False 2140 lncRNA 0.37 2 5169775 5172164
TCONS_00022083 True 3669 lncRNA 0.37 1 5169775 5173443

Neighbor

gene id symbol gene type direction distance location
XLOC_010407 dctn3 coding downstream 15743 5145132 ~ 5154032 (-)
XLOC_010406 ttk coding downstream 26599 5110455 ~ 5143176 (-)
XLOC_010405 CU694364.1 coding downstream 62358 5107298 ~ 5107417 (-)
XLOC_010403 bckdhb coding downstream 64453 5013868 ~ 5105322 (-)
XLOC_010404 LO018201.1 coding downstream 108146 5061499 ~ 5061629 (-)
XLOC_010409 NA coding upstream 279737 5453180 ~ 5588620 (-)
XLOC_010410 CR848788.1 coding upstream 433695 5607138 ~ 5612480 (-)
XLOC_010411 NA coding upstream 462843 5636286 ~ 5643738 (-)
XLOC_010412 si:dkey-283b15.2 coding upstream 477052 5650495 ~ 5671862 (-)
XLOC_010413 ndufa3 coding upstream 544317 5717760 ~ 5721386 (-)
XLOC_010626 CR392024.2 misc upstream 15721669 20895112 ~ 20895175 (-)
XLOC_010399 NA non-coding downstream 474152 4685663 ~ 4695623 (-)
XLOC_010396 NA non-coding downstream 611278 4554071 ~ 4558497 (-)
XLOC_010394 BX927222.1 non-coding downstream 642128 4527481 ~ 4527647 (-)
XLOC_010414 NA non-coding upstream 572865 5746308 ~ 5786042 (-)
XLOC_010416 BX957314.1 non-coding upstream 697130 5870573 ~ 5870689 (-)
XLOC_010418 NA non-coding upstream 1074580 6248023 ~ 6249246 (-)

Expression


Co-expression Network