G268687


Basic Information

Item Value
gene id G268687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2241130 ~ 2243425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU304868
CTCTGCATATGCTTTGAGTTTGGATTGTTTATAACGATCATCTGGGAACACAATCTGCACCATTTCACCAGATTTTTAATGTAAACAATTTATAAACCTACGTCAACTGTCACAGAGGGAACAAATGATACGTGCAGATCTATATGCAGGCTTTTATTAATCAAAGACATGGTCGATTACAGGCATGGGTTGGCAACAGCAAACAGGTATAGAGCAGGCGAGATAAAGAGTATTCCAGGGACAAGCGTGGTTGATCAGTGGCAAACAATATCCAGGAGGGCTAGGCTAAAGAATAATCCAGGGAAAACAGGCAATAGTCCAAGAAGTCCAAACGGCAAGGCGAGAGAGAAGTCCAAGACAGGCAGATAATCAGGAAACAGGCAATCAAAAAACAAGACATGACTAGACTAAGACTAGAACTGAACTCCAACTAGGACTGGGAACTGGCTCCGTAACATAGCTACGCTAAACAGCATAAATGCTAGCAATACTCGGCTGTGAGAGAGAGGAAGTCCATGGCTTATGTAGGGTGTGTGATTGGCTACAGCAGTGTGTGTAATCAGTGCAATGGATGATGGGAAATGTAGTCCGGGGTAAAGTGCAACAGTTAGTGTGGTGCAAGAGTCCATACAAAAAAGAAAGAACTGGGATCGTGACATAGGACAGGCGGCCACCACAGCTGAGTAAACAGGCTTGAAGACCCCCACGGTGGAGCAGATGGCCACCACAGCAATGCATACGGGCTTGAAGGCCTCAATGGCAGAGCAGATGACCACCATAGCAGTGCAGACGGGCTTGAAGACCCCCACGGTGGAGCAGACGACCACAAGAGTAGGACAGAAGACCACCACGGTGGAGCAGACAGAGTATAAGACCAGAGCATATTTGAAAACCACCACGGCGGGGCAGCCACCAGAGCATGGCTGAAGAACACCAGAGCGGAACAGCCGGCCTACACGACATAACAGTCTGAGTAGGTAACCACCAGAGTGGGACAGACAGCACCACGGAATCTGAAACAGAAGAAATAGGCAGAGAACCTATGGCCCTGAGTGTCAGAACAGGAAACACAGTGCGCCCAGCAACAGTCTCCTTGGCCTTAACAGAGAGATCAAAATTAAGTTCACTGACTGAGACTAGCAACACAGACAGGTCATAATTGGGCACATTTGGGAGCACTGCCAAGGCAGACAGTTCATACTGGGACTTACTGACTGAAACTGGTGAGCCAGACAGTTTAGAATCAGACACATTTAGGGAAACTGGAGAGGCAGATAGTTTGTAATTTGGCTCACTTTCTGAAGCTGGCAAGACAGACGGTTCAACAGGTATATTTGGGAAGACTGACTTATAATTTGACTGGCTGATGGAATTTGGCAGGACAGACATTTGGAAACCAGACACAATTGGAAAAAACTGAACAGACAGACAATTCAGCATTAGAATTACTGACTGACCCTGGCAAAACAGACACACTTGACAAAATCAGACACACTTGACAAGACTGGACAGATAGACGATTCATCATAAAACTCACTGACTGAAACTGACAAGACAGACAGGTAGAAAATTGAACAGGTAGACAGCTTACGGTCAGATTAATTTCTTGAAACTGAACTGGCAGACAGTGTACACCCAGGCTCATCAGTTGAAACAGAACAGGCAGGTAGCTCAACATCAGACATATTTACTGAGAATGGACAACCAGAGAGTGCTTTCATAGTCTCTTTGGCAATGAAGGTGTTAACAGGGCATAGTTCATTAACAGCCTCTGTGGCTGTGATAAACAAGGTTGAGTGCTCACAGATGGTCTCTGGGGTCGTGATAGGCTGGTTTGAGAGTGCAAAGATGAACTCTTTGGTTATGACAGGGCTACTAGAGCATACAGAACACTCATTTACAGTATCTGGGATCATGACAAGAATAACGGGGCAGACAAAAGGTTCATAGACAGCCTCCTTGGCCAGCTCAGAACAGAACAAGGGTTCAGAAATGGGTTCCTCGGCTGGCTTAGAGCAATACAAGAGTTCATAAATGGCCTCTGTGGCCGGTTCAGGACAAGACAAAAGTTCACAGGCAGCCTCTGCGGCTGGGTTGGGACAGGATGGAAGTTCACAGACAGCCTCTATAGTCATGACAGGACAAGAAGAGAGTTCACAGACGGCCTCCATAGCCGTGACAGGACAGGTAGAGGGCTGATAAGTGGAAACCATTGACACCTCTGGAGGTTCTGCAGTGATTGCCAGCACCCCTGGAGGTTCTACAGCAGTAACATCAGGAAACAGGGAGGATTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304868 True 2296 lncRNA 0.47 1 2241130 2243425

Neighbor

gene id symbol gene type direction distance location
CI01000065_01982908_01987337 NA coding downstream 253642 1982403 ~ 1987488 (-)
CI01000065_01955024_01969974 NA coding downstream 270907 1952778 ~ 1970223 (-)
CI01000065_01911879_01931555 HACE1, HACE1.L coding downstream 309575 1911512 ~ 1931555 (-)
CI01000065_01373412_01382125 NA coding downstream 858183 1373274 ~ 1382947 (-)
CI01000065_01297837_01321136 NA coding downstream 919994 1297799 ~ 1321136 (-)
CI01000065_02288372_02357728 GRIK3 coding upstream 44947 2288372 ~ 2357728 (-)
CI01000065_02358877_02366169 NA coding upstream 115428 2358853 ~ 2366169 (-)
CI01000065_02679973_02700843 NA coding upstream 436414 2679839 ~ 2701444 (-)
CI01000065_02820772_02829132 NA coding upstream 576287 2819712 ~ 2829132 (-)
CI01000065_02940142_02940429 NA coding upstream 696629 2940054 ~ 2940813 (-)
G268679 NA non-coding downstream 1146 2239140 ~ 2239984 (-)
G268684 NA non-coding downstream 5859 2235053 ~ 2235271 (-)
G268680 NA non-coding downstream 13436 2227441 ~ 2227694 (-)
G268471 NA non-coding downstream 151111 2089788 ~ 2090019 (-)
G268470 NA non-coding downstream 152384 2088355 ~ 2088746 (-)
G268701 NA non-coding upstream 17067 2260492 ~ 2260808 (-)
G268657 NA non-coding upstream 155902 2399327 ~ 2420933 (-)
G268751 NA non-coding upstream 294683 2538108 ~ 2538324 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 1457469 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 1616473 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 1661103 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 2186743 50386 ~ 55774 (-)
G267024 NA other downstream 2195043 43039 ~ 46087 (-)
G269348 NA other upstream 1065018 3304357 ~ 3312480 (-)
G269679 NA other upstream 1530455 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 1549698 3793123 ~ 3806693 (-)

Expression


Co-expression Network