Item | Value |
---|---|
gene id | G268751 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000065 |
NCBI id | null |
chromosome length | 4956624 |
location | 2538108 ~ 2538324 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU304936 | True | 217 | lncRNA | 0.37 | 1 | 2538108 | 2538324 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000065_02358877_02366169 | NA | coding | downstream | 171939 | 2358853 ~ 2366169 (-) |
CI01000065_02288372_02357728 | GRIK3 | coding | downstream | 180380 | 2288372 ~ 2357728 (-) |
CI01000065_01982908_01987337 | NA | coding | downstream | 550620 | 1982403 ~ 1987488 (-) |
CI01000065_01955024_01969974 | NA | coding | downstream | 567885 | 1952778 ~ 1970223 (-) |
CI01000065_01911879_01931555 | HACE1, HACE1.L | coding | downstream | 606553 | 1911512 ~ 1931555 (-) |
CI01000065_02679973_02700843 | NA | coding | upstream | 141515 | 2679839 ~ 2701444 (-) |
CI01000065_02820772_02829132 | NA | coding | upstream | 281388 | 2819712 ~ 2829132 (-) |
CI01000065_02940142_02940429 | NA | coding | upstream | 401730 | 2940054 ~ 2940813 (-) |
CI01000065_02979795_02989709 | BVES | coding | upstream | 439519 | 2977843 ~ 2989763 (-) |
CI01000065_02992054_02993108 | POPDC3 | coding | upstream | 453491 | 2991815 ~ 2993167 (-) |
G268657 | NA | non-coding | downstream | 117175 | 2399327 ~ 2420933 (-) |
G268701 | NA | non-coding | downstream | 277300 | 2260492 ~ 2260808 (-) |
G268687 | NA | non-coding | downstream | 294683 | 2241130 ~ 2243425 (-) |
G268759 | NA | non-coding | upstream | 7782 | 2546106 ~ 2546464 (-) |
G268790 | NA | non-coding | upstream | 54209 | 2592533 ~ 2592919 (-) |
G268795 | NA | non-coding | upstream | 60267 | 2598591 ~ 2598992 (-) |
G268836 | NA | non-coding | upstream | 137781 | 2676105 ~ 2676427 (-) |
G268860 | NA | non-coding | upstream | 165688 | 2704012 ~ 2704359 (-) |
CI01000065_00782736_00793467 | NT5C3A, NT5C3 | other | downstream | 1754447 | 782697 ~ 793467 (-) |
CI01000065_00622545_00624625 | NA | other | downstream | 1913451 | 622123 ~ 624657 (-) |
CI01000065_00563411_00579174 | MBPB, MBP | other | downstream | 1958081 | 562848 ~ 580083 (-) |
CI01000065_00050903_00055774 | NA | other | downstream | 2483721 | 50386 ~ 55774 (-) |
G267024 | NA | other | downstream | 2492021 | 43039 ~ 46087 (-) |
G269348 | NA | other | upstream | 770119 | 3304357 ~ 3312480 (-) |
G269679 | NA | other | upstream | 1235556 | 3773880 ~ 3774294 (-) |
CI01000065_03794501_03806693 | VEGFAA, VEGFA | other | upstream | 1254799 | 3793123 ~ 3806693 (-) |