G269252


Basic Information

Item Value
gene id G269252
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2924577 ~ 2929006 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU305515
TCGAACCCAAGCGGCTTTTATCTCCAATCGGGCCACCGTCCACCACAACCGCCAGACTGGGCCACAAATCCTCAAACTCATTAACAGCAACCGTGCTGGTTTGAGCGCTGACGTTAGCACTGGTGAGAGCGAGCGGCTCGCCGCACATCTGACAGAGGCGTCTCATGAACGGGTGGTCTGGGATACGGACCCCTATGAGCTTGGTGAAAGGATTGAGATCAGCGTTCAGTGTGGTGGATCTTTCCAGAACTAGTGTAACGGGTCCAGGCAGCAGATCTGAGAGCAGCTCCTCCTTCACAGACACCTTACAGTACCTGTATATGTCCTGTATTTCTCCGACACAGATGGCTAGAGGTTTGTCTCCATTCCTGCCCTTGATGTCATAAACTCTGCGGATGGCCGTGGAGTTCTGAGCCACACAGGCCAGACCGTAGATGGTGTCAGTGGGAACAGCCACGACCTGCCTGGCCTTCAGAGCCGTTACTGTGGCGCTCAGGACCTCCGTCCACTCCTGCTGCTGTGAAGTCATATCGTCTGAGTTTTGAGGTGAAATCCGCAGGACTCTCGTCTTCAGCTCTTTACACATGCTGACACTCTTCAAGGACTTACTTCGTGTGTACGAGGAAATATTTAAAAGTACGCTGGTCGTACGAATAAACCTGAAGAAGACCATAAACAGCTCAGCTCAATGACAGCATACAGCATGCTTTCATTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU305515 True 717 lncRNA 0.52 5 2924577 2929006

Neighbor

gene id symbol gene type direction distance location
CI01000065_02820772_02829132 NA coding downstream 95445 2819712 ~ 2829132 (-)
CI01000065_02679973_02700843 NA coding downstream 223133 2679839 ~ 2701444 (-)
CI01000065_02358877_02366169 NA coding downstream 558408 2358853 ~ 2366169 (-)
CI01000065_02288372_02357728 GRIK3 coding downstream 566849 2288372 ~ 2357728 (-)
CI01000065_01982908_01987337 NA coding downstream 937089 1982403 ~ 1987488 (-)
CI01000065_02940142_02940429 NA coding upstream 11048 2940054 ~ 2940813 (-)
CI01000065_02979795_02989709 BVES coding upstream 48837 2977843 ~ 2989763 (-)
CI01000065_02992054_02993108 POPDC3 coding upstream 62809 2991815 ~ 2993167 (-)
CI01000065_03015397_03024204 NA coding upstream 85846 3014852 ~ 3024204 (-)
CI01000065_03037531_03045960 SMPDL3B coding upstream 108355 3037361 ~ 3045960 (-)
G269250 NA non-coding downstream 160 2923145 ~ 2924417 (-)
G269262 NA non-coding downstream 67990 2855664 ~ 2856587 (-)
G268923 NA non-coding downstream 132983 2791370 ~ 2791594 (-)
G268860 NA non-coding downstream 220218 2704012 ~ 2704359 (-)
G268836 NA non-coding downstream 248150 2676105 ~ 2676427 (-)
G269253 NA non-coding upstream 3144 2932150 ~ 2933546 (-)
G269302 NA non-coding upstream 8914 2937920 ~ 2938284 (-)
G269303 NA non-coding upstream 9702 2938708 ~ 2939167 (-)
G269304 NA non-coding upstream 20539 2949545 ~ 2950332 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 2140916 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 2299920 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 2344550 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 2870190 50386 ~ 55774 (-)
G267024 NA other downstream 2878490 43039 ~ 46087 (-)
G269348 NA other upstream 379437 3304357 ~ 3312480 (-)
G269679 NA other upstream 844874 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 864117 3793123 ~ 3806693 (-)

Expression


Co-expression Network