G268965


Basic Information

Item Value
gene id G268965
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2939188 ~ 2940607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU305183
CCAAACTTGGTTTAGGTGAGTTTACGCTAACCATTGGTTCTTATCATACAATATGCATAAAACAAAAATACCATACAAAATACACTACACAAAACAGCCATAATCATAAACACAATGTCCTGGGATGCATGTTCATTTATAGATCAGTTAATCTATAAATTAATGCAGGAAAGTCTGTTTTGAGGACTATGGGTTTTCTATGGCCTCTGCTTTTCCACGTGGCTACATAGTTTTAGGCAATAAACTAAGTCTTATCAGATGGTGTCCATGGTAACTGAGGCCCTTGCCCAAGTTGGCTCGTTGGGGGAGGGTTCCGCAGACCCCAGAGTGAGTTTTAAAGATTATTTGTTAAATGTGACAAATAATTGTGTCTGATTTGTCTCAGTCATTACATGTGTTGAAAGTTGTTATATTGCTACTCTGTGCGTTCGCTCGGCGGCTACTATGAGACACTTGTAAATCAAGGAAACGAGATTCAAACAATAAGACTTGCTGTGTTGAGCTATAAAACATGATTAGTTTTCTGTTGATGAATGTATCCAAACAGTTGCTCACCTGTCTAATAAAACATATAATATATTAAAGCGTCTTTGCTGTTTCCATGGTTTCTACAAAATAAAACCAGAAACCGAGGGTAACGCAGGTATGATTTCATTGATAGGCGACGCACGGACATGGTCCGAGTCCTGGTTAAAATTGCTTATTTCTCTGGATTTAAACATTCTTGGAAGCATTTGGGATAATGTAAGTACACAGTTAACAAAATATATAACACTGTTCTAGTGGTTTTTGGATATTTTAATCCAAAATTTTTTTACATATTGTGCCTTTACAATATCTGCACATCAAGTCACAAATTTTCAATATTTATAGAAATGAGCTTCCGTTTGTGTAAATGAACATCTCATTTAGGAATTTCATGGTCCATAATCTTTCCAGGTTTATCTGTTCATTTTAACTGACTGGTGAGATGACCAGTGGACTTGAGTTTTTACTTTCATCATTATCGGCTGGGTTAAAGTATGGATAGAGTTTCTCAGTGAAATTCTGACCAGTGAAAGAGTAGATATGAAAGCTGGAGCCCACGTCATAAAAAGAGACCAGACCCTCCTCATAATCTACAAACACACCCATCTTCTCAGGTCTCACACTCTGAGGGAAAGAGACAGATGGATTATCACAAACTATATATTCATTGTCATCAGTCAGACCCAGAATCCAGATTCCACCCTCAGGACTCATTGTGATCCTCCCCTTCCTGTCAATGGATTCTCTGGCCACTCCTAAACCCCACTTAGTCTTTCCCTTCACCTGCACCTCATAGTAAAATCTCCCTGAACTGAATCCCTTCTTTGTCAGAACACAAAGACCCTCATAAAATCTCTTTGGGTTTTCTGGGACGTCTTGCTCAGTGTCTCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU305183 True 1420 lncRNA 0.38 1 2939188 2940607

Neighbor

gene id symbol gene type direction distance location
CI01000065_02924635_02929062 YRDC coding upstream 10096 2924635 ~ 2929092 (+)
CI01000065_02896930_02919963 MTF1 coding upstream 19025 2896930 ~ 2920163 (+)
CI01000065_02856492_02888060 INPP5B coding upstream 50733 2856492 ~ 2888455 (+)
CI01000065_02806198_02813320 NA coding upstream 125466 2806198 ~ 2813722 (+)
CI01000065_02783579_02788578 NA coding upstream 150322 2783315 ~ 2788866 (+)
CI01000065_02961093_02964309 NA coding downstream 20486 2961093 ~ 2964309 (+)
CI01000065_02976459_02977209 NA coding downstream 34744 2975351 ~ 2977220 (+)
CI01000065_03002626_03002997 NA coding downstream 61980 3002587 ~ 3003015 (+)
CI01000065_03027516_03035037 MECR coding downstream 86909 3027516 ~ 3035094 (+)
CI01000065_03237462_03238124 TMEM158 coding downstream 296767 3237374 ~ 3238153 (+)
G268930 NA non-coding upstream 137331 2801644 ~ 2801857 (+)
G268859 NA non-coding upstream 235577 2703400 ~ 2703611 (+)
G268796 NA non-coding upstream 339196 2599769 ~ 2599992 (+)
G268789 NA non-coding upstream 346277 2592533 ~ 2592911 (+)
G268787 NA non-coding upstream 350876 2588023 ~ 2588312 (+)
G268974 NA non-coding downstream 8595 2949202 ~ 2950412 (+)
G268996 NA non-coding downstream 56929 2997536 ~ 2999784 (+)
G268997 NA non-coding downstream 59736 3000343 ~ 3001750 (+)
G268957 NA non-coding downstream 69327 3009934 ~ 3037886 (+)
G268960 NA non-coding downstream 71886 3012493 ~ 3015502 (+)
G268805 NA other upstream 300983 2608907 ~ 2638205 (+)
G268525 NA other upstream 699190 2239159 ~ 2239998 (+)
G267577 NA other upstream 1856533 1082153 ~ 1082655 (+)
G267432 NA other upstream 2156309 782283 ~ 782879 (+)
G266932 NA other upstream 2894522 43038 ~ 44666 (+)
G269181 NA other downstream 518350 3458957 ~ 3462928 (+)
G269225 NA other downstream 612197 3552804 ~ 3553214 (+)

Expression


Co-expression Network