G268957


Basic Information

Item Value
gene id G268957
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3009934 ~ 3037886 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU305166
ATTGCAGTATTTATTCTAAATGATTTATTGGTGCACATCATCATTGTTTTAAATTCATGTTCCTGGTAATCTTGAATCAGAATAACTTCCCCTCCCTCTTGCAGCATCTCTTCTCTTCTCTGATGACGAGGGCGGGGCAATCTGTCACTCACATCAGATCCACCAATAGCAAACCACAACCATCCAATCAGTTCCTCACAGACAAAATCAAGCCCCGCCCTACATTTGCTCTTGTTCCAGAAGCAGTTTCACTCAGATATACAACACAATAGAGCGCTGCCGTGATAAAGTATTTTTGTAGGCCAACCACTAAATTTGCATCACACTGGTTCCCTTAACAAAAACCCAATAGGATTTTTCCATAGGCTTTTGAATTATCGCAAAAAAAGCTCTGTGATCAACAAAAGTTTATGATACATGATGTTTTACCCATCAAGATAACTTTCAAAAATGAACACAACTTTTATGAATTTTAAAACCGAAATACAATCAGCAGAAATAAAAAGCTAACCTTAGGCTATAAATGACGTACACCACGGTCACATGACTTCAACATCACCGCTAAGCTTCTGACAACTCTTTCAGTCTTTATTAAAAAAACATTGTCCCTGAAAGTTTGAGTTATATTAGTTTGCGAGAGCATTATTATAATAATATAATCATTAATATTATTTCTGAACCTCGCGTAGGCAGCAACGTCATTGCACCTTTCAAGGCCAGAAAAGTAGTAAAGACATCGTTAAAACAGTCATGTGTCTGCAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGCACAAAAACAAAACAAAAATAACTTTATTTAACAATTTCTTCTCTTTCCTGTCATTCTCCTATGCAGTTGACGTTGTAGACGCAGTGTGAAAAATGATGTCTTTTTTACTACCATTCTGGGCCTTGAAAGGTGCAATTATGTTGCTGCCTATGTGTGGTTCAGGTACCTCTCAGATTTCATCAAAAATATCTTCATTTGTGTTCTGAAGATTAACGAAGGTCTTACTGGTTTGAAACGACATGAGGGTGAATAATTAATGACAGAAATTTCATTTTTGGGTGAACTACCCCTTTAATGTCCAAATTCCTCTGTAGTCCTGTAATCACAAGAGGGTGTTACTTTCATAGAATAAAATGTGAGAATATCTTGAGCTTGTGTTCAACCCAGACCTTATTTCAGGCTTTTAAACAAAATCCTATTTAAAAAACCCATTGACTTCAAGACGATGGAACCGGAAGTGCTAAAATGCAACTTGTTTCTGGGTTTTGGCCTACAAAAATTACGTCATCCCTGCAGCACTATTTAGGGAAGAAAAGACTATCACAACTTTCATTTCATGCTGACTTTAAAGGGATAGTTCACCCAAAAATTTAAATTCTGTCATTTATTTACTCTCCTGTCACTCCAAATGTCTGTGGAAAACAAAATAATATATGTTGGGGTCCAAAAAAAAATATATACTTTTTTCAAAAAATATCTTCTTTGATGACAGCATTTTCATTTTGGGCTTAACGCTCTCTTTAAAGACAGTTGACGGTATTGACTTACATAGTGTTTACTATAATACTGGTGAGAACATGTCATTCACACACCGGTCTGGCTGACAATATTCAGAGACTGCTGTTCTGTGATCAGTTGAGCCGCAGCAGGCTCAGCATCAGTGACAGCAGCAGAGTAAACAGCGCTGGTCCAGCAGACGATCCTCCCTCCTTCAGCACGCAGCGCTCATACGCCTCAAAGTCAACCTCCCTCACCGCGCACACGTGATCGACACGGCAGTCAGCGTGGCACTCCGTCAGGTCATAACCCACCGAGTTGAACTCAAAATACTTCTGCAGATAACACTTGTCGCTGGTTATCCGCTCCATCACGCGGTGCATGGAGGCAGGAGAGGCGTCCGGCACGTGAAACGCCTCCGTCAGACGGTACTCCTTCTCCCAGCGCGCCCGTGCCATGTTTGCATATGTCAGGTTCAGATAGTAGGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU305166 True 2014 lncRNA 0.40 2 3009934 3037886

Neighbor

gene id symbol gene type direction distance location
CI01000065_03002626_03002997 NA coding upstream 6919 3002587 ~ 3003015 (+)
CI01000065_02976459_02977209 NA coding upstream 32714 2975351 ~ 2977220 (+)
CI01000065_02961093_02964309 NA coding upstream 45625 2961093 ~ 2964309 (+)
CI01000065_02924635_02929062 YRDC coding upstream 80842 2924635 ~ 2929092 (+)
CI01000065_02896930_02919963 MTF1 coding upstream 89771 2896930 ~ 2920163 (+)
CI01000065_03237462_03238124 TMEM158 coding downstream 199488 3237374 ~ 3238153 (+)
CI01000065_03244494_03285831 NA coding downstream 206608 3244494 ~ 3285831 (+)
CI01000065_03304326_03307505 NA coding downstream 265839 3303725 ~ 3307557 (+)
CI01000065_03344678_03368295 NA coding downstream 306445 3344331 ~ 3368472 (+)
CI01000065_03398558_03399971 CNIH4 coding downstream 360672 3398558 ~ 3400425 (+)
G268997 NA non-coding upstream 8184 3000343 ~ 3001750 (+)
G268996 NA non-coding upstream 10150 2997536 ~ 2999784 (+)
G268974 NA non-coding upstream 59522 2949202 ~ 2950412 (+)
G268965 NA non-coding upstream 69327 2939188 ~ 2940607 (+)
G268930 NA non-coding upstream 208077 2801644 ~ 2801857 (+)
G269029 NA non-coding downstream 70704 3108590 ~ 3108938 (+)
G269033 NA non-coding downstream 73961 3111847 ~ 3112914 (+)
G269167 NA non-coding downstream 400086 3437972 ~ 3438539 (+)
G269181 NA non-coding downstream 421071 3458957 ~ 3462928 (+)
G269205 NA non-coding downstream 478408 3516294 ~ 3516541 (+)
G268805 NA other upstream 371729 2608907 ~ 2638205 (+)
G268525 NA other upstream 769936 2239159 ~ 2239998 (+)
G267577 NA other upstream 1927279 1082153 ~ 1082655 (+)
G267432 NA other upstream 2227055 782283 ~ 782879 (+)
G266932 NA other upstream 2965268 43038 ~ 44666 (+)
G269225 NA other downstream 514918 3552804 ~ 3553214 (+)

Expression


Co-expression Network