G268960


Basic Information

Item Value
gene id G268960
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3012493 ~ 3015502 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU305178
TAAAACTTATTTCATCTTTATTAGGTACTATCAAGAAATACATTTACTTGTGAGATCAAAGCACTGTGCATCAAATCATACACAACATTAGAACAGTTTCTTTTAATTAATTTTAAGAAATAAATATTTCTTGAGAATAAACAAAGTATTATTATTTTGCATAATTTCAGCTGAGAAAAATGAACCTTGAACCTTGTTGAAGACTTGCAACAAAATACCATTTGTAAAAGGAATTACATTCATGCAAACTGAAGTCTTGTTTTCAATGCTGTACTGTATATGCTCCAGATAATTCAGAGACAAACATATTATATGGAAACTACTCTCTTACTATCAGTGTCTGACACATAAGTGCAGGATTAGTGAAACACTTTGAAATGGTCTGTATTTCTGCATGAATGGCTCATAACATTGAGATCTGATCCATATTAATGAACAAAATATACCATTTAAAGTGCCAATTAAGTTTGATCTGAGGTGATGAGATGCTTGATTTATGTCTTATAAGGGTGTATATGATTACAAATATTTGAGACAATTTTTATGAGCCATTCCTACAGAAATTGAAGTTATTTTTTCCTAAATACATGCCAGCACATGCATAAAATAAATACACAGACACACACAAACACACACACTGACACACACACACACACACTGACACACACACACACACACACACACACAAAGAGTCCTACCCACCATCACAGAAATCAAAGGGGCTTGGGGCAAAAATGGCAACAAAATTAATAAAAATGCTCCCCAAAAATCAAGATATATGTGGCAAAAATATCCCTGTATGAATTCTTGTTTTTAATATTTATATCATAAACAAGAAGTTCATGTTAGGTGACTTAAAACCGAACAACTGAAGGAATCGTTTGACTGAATGATTGAATGACTCACTCGTTACAGTTTTCACAATCACTAGGACACATTTCTCAAATCTCTTCACAGTGATCACATTATCAGTCTATGTGAGCTAAACTGTGGATCATTTATCACTGCTTTGGCACACAATGCATTCAATGACTACATCTTTTGATTTACATGAATACATTCTCAATTAGACACAACTACCATAAAAACTCTGTGAACCTACAGGCCAATTTCCACATTTACATACTCTTTTATAAGACAGCAATTTGCTACATTTCTACAGTAAATACAGCACAAATACACTGTATATATACAGTATGTATTCACAATTGATTAATGTTATTGAACTGAACTGAATCAACACTGAACTGACGTGAGATGAATAATGACACTATTGACTTGTTAGAGCTGCTTTACAACAGAATTTGAACTTGTTACTCTTGTGAAGCTGCTTCGAAACAGTATGTATTGTATAAAGCACTATAGAAATAAAGGTTGACTTGTATGCATAATCAGTGTTGGAGCCATTATATTGAATTGTAATTTTTGTTTGTGACACTAGAGGGCATGTGAGTATATTTAACCCAAGTGCTAATGAGATACAGGTGGCGCAATGGAAGTGCAAACAAACTTTTTGACCGTGCCATGTCAAGCATGCAGCGTATCGTGCAGGACTGTGCTCGTGCCCGTTAACAGTTTGTTTTGAATGGTATTTTTGTTTTTTGAGTAGAAAATCGAAGTTAAATTTGAAGTTTTATTTTAATTTTATTTTTGTTATTTGCAATGCTAAATGGACAATAAATGGATTGGCATATCCGACTTTATTCCAAAGGTATGGACAATAACTTCATTTATTCAAGGCAAAGCACGCGTCAGAAACAGACTTCTAAACCCCATCTGCGTCCCTACAATCAGTATTTACAAAATAAACAGAAATGCAAGAGTGAAAAATGTATTTGTTTCTCAAATCATTGAGTTTTGATTTCTAAGTGATCAAATTAGGTATATTTACACTATAAACAGGAATGCAGGAGGTTAAAAAAATGATCAAAACGAGTTTTGATCAATTTATCAATAAGTGTTTTCACATGATCACTGGGTGTAGGTAATCGGGAAATGATTGTGGTATTAAATTTCTTAAATGAAACACAATAGCTGCTATTTTTTTAGTTATGTGTCTAATGTAGAGAACTGTGTTAAAAGTTTGTTTTACAATTGCAAACTAAGTGTAAAGCAGATAATGTGCTTGTATTTTTGCAGACTTAGTCTCAAGATTAGGTACATATGGCACGCACAGCAAGATCCTCGAGCAATGCCAAGAGTGCCAAGCAATGCCATCCTCAAAACAAGTTCAAACACAATAAACACCTGAGAAATGTGTCCTAGCGATTGTAAAAAAACTGTAAGAGAATGATTTGCTGCCACCTAGTTTTAGTTTCAGTACATTTTTTCCATGTTTATTTTCTATATTTATATCTGGCGTCTGCGGCTGATAAAATCATTCCTGCGGTCCAACATGCTGCAAGAAAGACTGTCCACACTTGCTCAGATGTCAACTGAACACGACGTTATGAGATCGCTGTATAAAGATAAACTTTCAGAGCTTTTGCAGCACTTCATTATCAGAAAGACATGCTCTAAATGTCAAAATCAGATCAACCTAAGTGTAAAACATTTCCTCTTGATGTAGCCTATTCTTATTCATATTGTATTAAATCACTTATCTAATCCCTATTATTTAATTTTTATTTTTTTGCTCTCATGGCCTTGGTCATTAACGCTGAGGGGCTGAGGGAGTGATGAAGATTGAATGTTGATTTTGTTCCCGGTCGTGATTGTAATGTGTGGATAGAATGCATTTTAAATAGACTATTAAGAGTAACATAAGGAGTTAATATAATAAACACAATGGTAAAGGCCACCTCTGACCCAAACACACACACACACACACACTCAGCACTGGAGCAGGATCCAGCACTTCAGTCAGGTTCAGCTCTCATCTTATCTGACTGCTTGCCAAATGATTATAGCAAAGATGGTTGCCACTAGCGACATGACAAGAGCCAGGATACACATCCTCTTGCGGGATTTTCTCTTTAAAGGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305178 True 2986 lncRNA 0.34 2 3012493 3015502

Neighbor

gene id symbol gene type direction distance location
CI01000065_03002626_03002997 NA coding upstream 9478 3002587 ~ 3003015 (+)
CI01000065_02976459_02977209 NA coding upstream 35273 2975351 ~ 2977220 (+)
CI01000065_02961093_02964309 NA coding upstream 48184 2961093 ~ 2964309 (+)
CI01000065_02924635_02929062 YRDC coding upstream 83401 2924635 ~ 2929092 (+)
CI01000065_02896930_02919963 MTF1 coding upstream 92330 2896930 ~ 2920163 (+)
CI01000065_03027516_03035037 MECR coding downstream 12014 3027516 ~ 3035094 (+)
CI01000065_03237462_03238124 TMEM158 coding downstream 221872 3237374 ~ 3238153 (+)
CI01000065_03244494_03285831 NA coding downstream 228992 3244494 ~ 3285831 (+)
CI01000065_03304326_03307505 NA coding downstream 288223 3303725 ~ 3307557 (+)
CI01000065_03344678_03368295 NA coding downstream 328829 3344331 ~ 3368472 (+)
G268997 NA non-coding upstream 10743 3000343 ~ 3001750 (+)
G268996 NA non-coding upstream 12709 2997536 ~ 2999784 (+)
G268974 NA non-coding upstream 62081 2949202 ~ 2950412 (+)
G268965 NA non-coding upstream 71886 2939188 ~ 2940607 (+)
G268930 NA non-coding upstream 210636 2801644 ~ 2801857 (+)
G268964 NA non-coding downstream 2390 3017892 ~ 3023226 (+)
G269005 NA non-coding downstream 9706 3025208 ~ 3081681 (+)
G269029 NA non-coding downstream 93088 3108590 ~ 3108938 (+)
G269033 NA non-coding downstream 96345 3111847 ~ 3112914 (+)
G269167 NA non-coding downstream 422470 3437972 ~ 3438539 (+)
G268805 NA other upstream 374288 2608907 ~ 2638205 (+)
G268525 NA other upstream 772495 2239159 ~ 2239998 (+)
G267577 NA other upstream 1929838 1082153 ~ 1082655 (+)
G267432 NA other upstream 2229614 782283 ~ 782879 (+)
G266932 NA other upstream 2967827 43038 ~ 44666 (+)
G269181 NA other downstream 443455 3458957 ~ 3462928 (+)
G269225 NA other downstream 537302 3552804 ~ 3553214 (+)

Expression


Co-expression Network