Gene
RNA
| Item | Value |
|---|---|
| gene id | G269029 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 3108590 ~ 3108938 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU305253 | True | 349 | lncRNA | 0.39 | 1 | 3108590 | 3108938 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_03027516_03035037 | MECR | coding | upstream | 73496 | 3027516 ~ 3035094 (+) |
| CI01000065_03002626_03002997 | NA | coding | upstream | 105575 | 3002587 ~ 3003015 (+) |
| CI01000065_02976459_02977209 | NA | coding | upstream | 131370 | 2975351 ~ 2977220 (+) |
| CI01000065_02961093_02964309 | NA | coding | upstream | 144281 | 2961093 ~ 2964309 (+) |
| CI01000065_02924635_02929062 | YRDC | coding | upstream | 179498 | 2924635 ~ 2929092 (+) |
| CI01000065_03237462_03238124 | TMEM158 | coding | downstream | 128436 | 3237374 ~ 3238153 (+) |
| CI01000065_03244494_03285831 | NA | coding | downstream | 135556 | 3244494 ~ 3285831 (+) |
| CI01000065_03304326_03307505 | NA | coding | downstream | 194787 | 3303725 ~ 3307557 (+) |
| CI01000065_03344678_03368295 | NA | coding | downstream | 235393 | 3344331 ~ 3368472 (+) |
| CI01000065_03398558_03399971 | CNIH4 | coding | downstream | 289620 | 3398558 ~ 3400425 (+) |
| G269005 | NA | non-coding | upstream | 26909 | 3025208 ~ 3081681 (+) |
| G268957 | NA | non-coding | upstream | 70704 | 3009934 ~ 3037886 (+) |
| G268964 | NA | non-coding | upstream | 85364 | 3017892 ~ 3023226 (+) |
| G268960 | NA | non-coding | upstream | 93088 | 3012493 ~ 3015502 (+) |
| G268997 | NA | non-coding | upstream | 106840 | 3000343 ~ 3001750 (+) |
| G269033 | NA | non-coding | downstream | 2909 | 3111847 ~ 3112914 (+) |
| G269167 | NA | non-coding | downstream | 329034 | 3437972 ~ 3438539 (+) |
| G269181 | NA | non-coding | downstream | 350019 | 3458957 ~ 3462928 (+) |
| G269205 | NA | non-coding | downstream | 407356 | 3516294 ~ 3516541 (+) |
| G269218 | NA | non-coding | downstream | 433165 | 3542103 ~ 3542572 (+) |
| G268805 | NA | other | upstream | 470385 | 2608907 ~ 2638205 (+) |
| G268525 | NA | other | upstream | 868592 | 2239159 ~ 2239998 (+) |
| G267577 | NA | other | upstream | 2025935 | 1082153 ~ 1082655 (+) |
| G267432 | NA | other | upstream | 2325711 | 782283 ~ 782879 (+) |
| G266932 | NA | other | upstream | 3063924 | 43038 ~ 44666 (+) |
| G269225 | NA | other | downstream | 443866 | 3552804 ~ 3553214 (+) |
