G269348



Basic Information


Item Value
gene id G269348
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3304357 ~ 3312480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU305636
GTGATGAAGCAGCGCTACCCAACTGTCTCCACAGGTTTTCCTGCATGAGGGTGTAGGTGCTACCTGTGTCCAATACGGCCTTAACTTCTTTGCCTTTTACTGTTACAGGAACCAAGAGGAGTGATGTCAGTGAGTGAGGTTGTGCGATCGATAATCCAGCCAGGTTTTTGGAGTCCCCCTCAAACAGCCCGCGACCCTGGGGTTAATGTTGATGAGGATGCGGCTCACCATCTCGTCCTCCGCCATATCAGGCTTCCATTTGAGGCAGAGGGCCTGATAATCATAGGCAAAATCTCTCAGGCGTTGACGCGGCTACTGGACCAAAGACCTCAGCTTATCCTCCACCTCTGTGAGCTGAGAGCAGGCCCTTTCAGGACCATGTTCAGGGTTCCGTAGAGCTCCCCACTGGGAAGGGGCCTGATGTCCAAGTAGTTCTCACATTTTTTGATGAAGTTGAGCACATCCGATGTCTCGCAGGAGTCACCAAAGGTGGGAAACTCCAACCGAATAGGGTGCTGAGTGCAGAAAGAAAATGTACTTGGAACAGCTGGAGGATTAAGCACATTGGTTAGTGGTGTAGACACAGGGGAGACATATGTTGCATTGGCAGATTTTGGTAGTGGTACTCTAACTCTAGGGGCTGGCACTGGGGTTACGGGAGCGTGAACCGAGGAAATAGAGTGAGCTGGAGTATAAGAGTGTAATCTGGAGAGAGAAGGGGTACTAGTTAGTCGTAGCTTCTTCATTTGACGTTCCCACTTTTCATCTCTCCTCAGCAAACAGTCCACCACAGCCCTCTCCAACTTCTCCAAGCAGTTACGAAAAGAGTCCTCTAAGTCTGCTAAGCTAGCGTCCACAGCATCCCTGAAACTGGACTCCTGATTGAGGGTGCTTTCTACAGACTGTTTAAACTCATGCTCAAATGTTTGTACCTTAGTATTAAGGGCCAGTAAAT
>TU305637
GATCTGCAGTTTACACAGTGAGAAACTCAAACTCTTCTGTCTGGAGGACAAACAGCCTTTGTGTTTAGTGTGCAGAGATTCACAGAAACACGTCAGTCACACATTCAGACCCATCTGTGAAGTTGTTTCATCATATAAGGAGGAGCTCAATACAGCACTGAAGTCCTTACAAGAGAAACTTCAACACAAGAAAAACATTAAAGGAGAGTTTGAGAAAACAGTTCAACACATCGAGTCTCAAGCTGAGCACACAGAGCGTCAGATTAAACAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAGATGAAGAAGAAGCTACAATCACTGCACTGAGGGAGGAAGAGGAGCAGAAGAAGCAGATGATGAAGGAGAAGCTGGAGGAGATGAACAGACACATCTCAGCTCTTTCACACACAATCAAAGACACGGAGGAGATGATGAAAGCCAATGACGTCTGCTTTCTGAAGGAGTTTCCAGTCTCAAAGGAAAGAGTCCAGATCTCACAGCCGGATCCACAGATGGCTTCTGGAGCTTTGATTCATGTGCCGCGTTACTTGGGCAACCTTCCGTTCAGAGTCTGGAAGAAGATGCAGGACATCGTCCAAAACACTCCTGTGATTCTGGATCCAAACACTGCAGATCCACGTCTCGTCCTGTCTGATGATCTGACCAGTGTGAGAAACAGCGGGAACAAACAACCTCTTCCTGATAATCCAGAGAGATTTGACTGTTATGAGTGTGTTCTGGGTTCAGAGGGTTTTAACTCAGGAACACACTGCTGGGATGTGGAGGTTAAAGAGAGTCAGTGGTGGACTCTTGGAGTAACTACAGCATCAATCAAGAGGAAGGGAGATGTTTTCTTCAGCACTGATGTCTGGTGTGTGTCGTACAGATGGACTCCAGGTTCTAGTTTTCGTGTCAATCAGAAGCTTGATCATGTGAGAGTGAATCTGGACTATGACAGAGGAACGGTTTCATTTTCTGATCCTGTAACTAACACACATCTACACACATTCACAACCACCTTCACTCACACACTCTTTCCATTCTTCTGCTCTTGCTCTCTGAGGATCTTACCG
>TU305628
GATCTGCAGTTTACACAGTGAGAAACTCAAACTCTTCTGTCTGGAGGACAAACAGCCTTTGTGTTTAGTGTGCAGAGATTCACAGAAACACGTCAGTCACACATTCAGACCCATCTGTGAAGTTGTTTCATCATATAAGGAGGAGCTCAATACAGCACTGAAGTCCTTACAAGAGAAACTTCAACACAAGAAAAACATTAAAGGAGAGTTTGAGAAAACAGTTCAACACATCGAGTCTCAAGCTGAGCACACAGAGCGTCAGATTAAACAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAGATGAAGAAGAAGCTACAATCACTGCACTGAGGGAGGAAGAGGAGCAGAAGAAGCAGATGATGAAGGAGAAGCTGGAGGAGATGAACAGACACATCTCAGCTCTTTCACACACAATCAAAGACACGGAGGAGATGATGAAAGCCAATGACGTCTGCTTTCTGAAGGAGTTTCCAGTCTCAAAGGAAAGAGTCCAGATCTCACAGCCGGATCCACAGATGGCTTCTGGAGCTTTGATTCATGTGCCGCGTTACTTGGGCAACCTTCCGTTCAGAGTCTGGAAGAAGATGCAGGACATCGTCCAAAACACTCCTGTGATTCTGGATCCAAACACTGCAGATCCACGTCTCGTCCTGTCTGATGATCTGACCAGTGTGAGAAACAGCGGGAACAAACAACCTCTTCCTGATAATCCAGAGAGATTTGACTGTTAT
>TU305632
TTAATCTTGTGTTAAAAAACTTGTGTGAGTTGGTCCTGACGGAGAGAAATGAGACGAGTTCATCAGGATCTGAGGAGATCTGCAGTTTACACAGTGAGAAACTCAAACTCTTCTGTCTGGAGGACAAACAGCCTTTGTGTTTAGTGTGCAGAGATTCACAGAAACACGTCAGTCACACATTCAGACCCATCTGTGAAGTTGTTTCATCATATAAGGAGGAGCTCAATACAGCACTGAAGTCCTTACAAGAGAAACTTCAACACAAGAAAAACATTAAAGGAGAGTTTGAGAAAACAGTTCAACACATCGAGTCTCAAGCTGAGCACACAGAGCGTCAGATTAAACAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAGATGAAGAAGAAGCTACAATCACTGCACTGAGGGAGGAAGAGGAGCAGAAGAAGCAGATGATGAAGGAGAAGCTGGAGGAGATGAACAGACACATCTCAGCTCTTTCACACACAATCAAAGACACGGAGGAGATGATGAAAGCCAATGACGTCTGCTTTCTGAAGGAGTTTCCAGTCTCAAAGGAAAGAGTCCAGATCTCACAGCCGGATCCACAGATGGCTTCTGGAGCTTTGATTCATGTGCCGCGTTACTTGGGCAACCTTCCGTTCAGAGTCTGGAAGAAGATGCAGGACATCGTCCAAAACACTCCTGTGATTCTGGATCCAAACACTGCAGATCCACGTCTCGTCCTGTCTGATGATCTGACCAGTGTGAGAAACAGCGGGAACAAACAACCTCTTCCTGATAATCCAGAGAGATTTGACTGTTAT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU305636 False 955 lncRNA 0.50 3 3304357 3305539
TU305637 False 1078 TUCP 0.45 6 3308443 3312404
TU305628 False 733 TUCP 0.45 6 3308788 3312404
TU305632 True 809 TUCP 0.45 6 3308788 3312480

Neighbor


gene id symbol gene type direction distance location
CI01000065_03159239_03164326 LARS2 coding downstream 140031 3159239 ~ 3164326 (-)
CI01000065_03113629_03136974 LARS2 coding downstream 167383 3113458 ~ 3136974 (-)
CI01000065_03060532_03105332 LIMD1 coding downstream 198182 3059417 ~ 3106175 (-)
CI01000065_03037531_03045960 SMPDL3B coding downstream 258397 3037361 ~ 3045960 (-)
CI01000065_03015397_03024204 NA coding downstream 280153 3014852 ~ 3024204 (-)
CI01000065_03369379_03371121 NA coding upstream 63380 3368919 ~ 3371441 (-)
CI01000065_03373810_03377138 NA coding upstream 67164 3372703 ~ 3377138 (-)
CI01000065_03385522_03396519 FEZ2 coding upstream 79983 3385522 ~ 3397081 (-)
CI01000065_03413002_03434286 WDR26, WDR26.S coding upstream 107190 3412729 ~ 3434286 (-)
CI01000065_03442791_03477709 DNAJC27, ADCY3A, ADCY3 coding upstream 137056 3442595 ~ 3477709 (-)
G269337 NA non-coding downstream 194802 3108288 ~ 3109555 (-)
CI01000065_02979795_02989709 BVES non-coding downstream 325765 2977843 ~ 2989763 (-)
G269304 NA non-coding downstream 354025 2949545 ~ 2950332 (-)
G269303 NA non-coding downstream 365190 2938708 ~ 2939167 (-)
G269302 NA non-coding downstream 366073 2937920 ~ 2938284 (-)
G269424 NA non-coding upstream 46061 3351600 ~ 3352903 (-)
G269436 NA non-coding upstream 91571 3397110 ~ 3397359 (-)
G269440 NA non-coding upstream 131599 3437138 ~ 3437390 (-)
G269399 NA non-coding upstream 185033 3490572 ~ 3491380 (-)
G269446 NA non-coding upstream 190549 3496088 ~ 3496312 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 2520696 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 2679700 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 2724330 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 3249970 50386 ~ 55774 (-)
G267024 NA other downstream 3258270 43039 ~ 46087 (-)
G269348 NA other upstream 2904 3304357 ~ 3312480 (-)
G269679 NA other upstream 468341 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 487584 3793123 ~ 3806693 (-)

Expression



Co-expression Network