Gene
RNA
| Item | Value |
|---|---|
| gene id | G269167 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 3437972 ~ 3438539 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU305413 | True | 568 | lncRNA | 0.37 | 1 | 3437972 | 3438539 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_03398558_03399971 | CNIH4 | coding | upstream | 37547 | 3398558 ~ 3400425 (+) |
| CI01000065_03344678_03368295 | NA | coding | upstream | 69500 | 3344331 ~ 3368472 (+) |
| CI01000065_03304326_03307505 | NA | coding | upstream | 130415 | 3303725 ~ 3307557 (+) |
| CI01000065_03244494_03285831 | NA | coding | upstream | 152141 | 3244494 ~ 3285831 (+) |
| CI01000065_03237462_03238124 | TMEM158 | coding | upstream | 199819 | 3237374 ~ 3238153 (+) |
| CI01000065_03486630_03494354 | NA | coding | downstream | 48028 | 3486567 ~ 3495740 (+) |
| CI01000065_03692428_03692874 | NA | coding | downstream | 253889 | 3692428 ~ 3693420 (+) |
| CI01000065_03709249_03716992 | NA | coding | downstream | 270605 | 3709144 ~ 3717908 (+) |
| CI01000065_03815841_03816140 | NA | coding | downstream | 374319 | 3812858 ~ 3816590 (+) |
| CI01000065_03980525_03983765 | NA | coding | downstream | 541986 | 3980525 ~ 3984923 (+) |
| G269033 | NA | non-coding | upstream | 325058 | 3111847 ~ 3112914 (+) |
| G269029 | NA | non-coding | upstream | 329034 | 3108590 ~ 3108938 (+) |
| G269005 | NA | non-coding | upstream | 356291 | 3025208 ~ 3081681 (+) |
| G268957 | NA | non-coding | upstream | 400086 | 3009934 ~ 3037886 (+) |
| G269181 | NA | non-coding | downstream | 20418 | 3458957 ~ 3462928 (+) |
| G269205 | NA | non-coding | downstream | 77755 | 3516294 ~ 3516541 (+) |
| G269218 | NA | non-coding | downstream | 103564 | 3542103 ~ 3542572 (+) |
| G269223 | NA | non-coding | downstream | 113231 | 3551770 ~ 3551991 (+) |
| G269225 | NA | non-coding | downstream | 114294 | 3552804 ~ 3553214 (+) |
| G268805 | NA | other | upstream | 799767 | 2608907 ~ 2638205 (+) |
| G268525 | NA | other | upstream | 1197974 | 2239159 ~ 2239998 (+) |
| G267577 | NA | other | upstream | 2355317 | 1082153 ~ 1082655 (+) |
| G267432 | NA | other | upstream | 2655093 | 782283 ~ 782879 (+) |
| G266932 | NA | other | upstream | 3393306 | 43038 ~ 44666 (+) |
