G269181


Basic Information

Item Value
gene id G269181
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3458957 ~ 3462928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU305427
TTCCTGTAATCACAATGTTTACAGATGCTGTCCACACACACGCACACAAATGCGCACACACACAATACATACGCTTGTACGGTCTCTCTCTCCAGCAGAGCTTCATTGAGGAGTTTATTGAGCTCCTGTTCATTCTCCTGAGCGTCGATCACTCTCTCAGCCAGATCCCGCAGACGTAACCGACGCCGCGGGTTTGGAAATGAGGGGTTCACCACCCGTGTATCCAGCTCCTCTGGATCCTCCGGTGTGGTACATGCCGTGTGGACGCTCCCATTACACTCCGTGGTGTTGATCAGTAATGGAGAATTCCCATTCGATGACGTCACCGAAAGCTTTACTCCATTGATGCCATTTTTGCCCACGGGTCCCTTGGGCACCACCACCAAGTATGTTTCAATGCCCCTTTCCTTCAGGTATTCACAGCGGTCTCCTCCATTCCCTGGCTCCACATCAAACTCCCCGTGCAGACACTCCAGGGTATTCTGGGAGATGTGTACTCGCCTACCAGAAACATTTCAGTTCAAGCATAGCCTGTTTTCTGAGTCCATTAATGGCCGACATAACCAGTTGTTCTGCTGATTTCGCAATACTTGCAGACAATGTTCTGTTGAAAACTCAGGGCAAATTAACTAAAGAGTCACTAACAACTCGCAATCCGCGCTGGTATAGTGTTGAGCTGGAAGCATTGTAATTAAGTATATGAAAAATAAGTACACTTTAGCATGTGTATTTAGGGTGGGTCTCACTGTAATTGAGTTTTACTGATGATGATGATGATGGATAAGGGTCTAATAATCAGGCATATATCCAGATGTGTCTCATCCATGACTGTTCGCTCACGTGTTGTTTGCAGTATGTGGGCGTATTTCAGTTAGGGAGGAGTAAAGTTTAGTGGCCTGAACAACCAGATGCATTTACACTTGTCTGAGTCACTTCTTGCAGTGACTGATCTGCCGTCTGTCTTCACTGTGTGTCAGAGGGCATTTACACTGGATACACACATGAATGAATAGCTGTCCGATATGGCTGTACGATATATCAAAATAAAATCAAGTTCAGGCTGTGATTTAATTAAGTAAATATACACGTGTAGTTCATGATACAGTGTTTCAGAGACTCAGAATGGCCAGTGTAATCAAGTCGCTCTGGGACGCTGCGAGCTGCACGCGTGTAAATGAACGTACAGCGCTTTCACATTTATTTATTTGCTGGCAACACATCAAAATAAAAGCTTGTAAATATTTGTATTGTAATTTTTTTTTTTTTTTTTTTTTTACAGCACAATAGGATTATTACAATATATTTCTTATTTGACTATATTCAGTAATAATCACAATGAAATCATAATAAATAAATAAATTGTATTTTTTTTTGGTGGCTTTTTTTGTTTTGTTTTGCTATATTCTTTCCTTAACAAATTCATTAATTAATTATTCTTTCCAAATAGAGCTATCTAGAGTCATCTGGTAAAACTTCCTGTATTTTTTGATATCGCAATATACAGTAGTGGCCAAAAGTGATGTCTGGCCTAGGAAAATTGACATCTTTACCCTTTATTCAAATATTATTAAAAATTTGTTGACAATTTTATAAGTGTATTGTGTAGTTGTGCTTGGAGTCAATTGTTTTATTTGTGAAACATGGCAAATTGTGGCGACATCATTTTTGGCCAGGCTGTCACACAAAGAAATTATGAACACAGGCAAAAACAAGAGAGAACCAACCAAATATTAAAGGGAAAGTTCACCCAAAACTGAACATTTTTACCTCATTTCCACCTACTGGTATGGTACAGTACAGTTCAGTACGGTACTCAATTTTTG
>TU305428
TTCCTGTAATCACAATGTTTACAGATGCTGTCCACACACACGCACACAAATGCGCACACACACAATACATACGCTTGTACGGTCTCTCTCTCCAGCAGAGCTTCATTGAGGAGTTTATTGAGCTCCTGTTCATTCTCCTGAGCGTCGATCACTCTCTCAGCCAGATCCCGCAGACGTAACCGACGCCGCGGGTTTGGAAATGAGGGGTTCACCACCCGTGTATCCAGCTCCTCTGGATCCTCCGGTGTGGTACATGCCGTGTGGACGCTCCCATTACACTCCGTGGTGTTGATCAGTAATGGAGAATTCCCATTCGATGACGTCACCGAAAGCTTTACTCCATTGATGCCATTTTTGCCCACGGGTCCCTTGGGCACCACCACCAAGTATGTTTCAATGCCCCTTTCCTTCAGGTATTCACAGCGGTCTCCTCCATTCCCTGGCTCCACATCAAACTCCCCGTGCAGACACTCCAGGGTATTCTGGGAGATGTGTACTCGCCCTGGTATTCCTCCTGCCTCCATCTTATTGGCCACCGTCACGTCAGTAGACCACACATCATACTGCCAGCGCTTCTGTCCGAGCACCCCACCCAAGACTGTTCCAGAATGCACCCCGACACGCATGTCCACATCGGTCTGCGTCTTCTCTCGAACATATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305427 False 1823 lncRNA 0.40 3 3458957 3461819
TU305428 True 663 TUCP 0.53 4 3458957 3462928

Neighbor

gene id symbol gene type direction distance location
CI01000065_03398558_03399971 CNIH4 coding upstream 58532 3398558 ~ 3400425 (+)
CI01000065_03344678_03368295 NA coding upstream 90485 3344331 ~ 3368472 (+)
CI01000065_03304326_03307505 NA coding upstream 151400 3303725 ~ 3307557 (+)
CI01000065_03244494_03285831 NA coding upstream 173126 3244494 ~ 3285831 (+)
CI01000065_03237462_03238124 TMEM158 coding upstream 220804 3237374 ~ 3238153 (+)
CI01000065_03486630_03494354 NA coding downstream 24748 3486567 ~ 3495740 (+)
CI01000065_03692428_03692874 NA coding downstream 230609 3692428 ~ 3693420 (+)
CI01000065_03709249_03716992 NA coding downstream 247325 3709144 ~ 3717908 (+)
CI01000065_03815841_03816140 NA coding downstream 351039 3812858 ~ 3816590 (+)
CI01000065_03980525_03983765 NA coding downstream 518706 3980525 ~ 3984923 (+)
G269167 NA non-coding upstream 20418 3437972 ~ 3438539 (+)
G269033 NA non-coding upstream 346043 3111847 ~ 3112914 (+)
G269029 NA non-coding upstream 350019 3108590 ~ 3108938 (+)
G269005 NA non-coding upstream 377276 3025208 ~ 3081681 (+)
G268964 NA non-coding upstream 435731 3017892 ~ 3023226 (+)
G269205 NA non-coding downstream 54475 3516294 ~ 3516541 (+)
G269218 NA non-coding downstream 80284 3542103 ~ 3542572 (+)
G269223 NA non-coding downstream 89951 3551770 ~ 3551991 (+)
G269225 NA non-coding downstream 91014 3552804 ~ 3553214 (+)
G269232 NA non-coding downstream 105512 3567331 ~ 3567533 (+)
G268805 NA other upstream 820752 2608907 ~ 2638205 (+)
G268525 NA other upstream 1218959 2239159 ~ 2239998 (+)
G267577 NA other upstream 2376302 1082153 ~ 1082655 (+)
G267432 NA other upstream 2676078 782283 ~ 782879 (+)
G266932 NA other upstream 3414291 43038 ~ 44666 (+)
G268957 NA non-coding upstream 421071 3009934 ~ 3037886 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G249337 NA non-coding NC_048567.1 CM023221.2 34440227 ~ 34440489 (+)