XLOC_010415 (trak1a)


Basic Information

Item Value
gene id XLOC_010415
gene name trak1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5786770 ~ 5873866 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020470
GATCATATCAGAGATGTTCCTGATTTGCTAACAGTGGTTTGTCACACATCTGGGAGACGGCCCCACTGGACTGTTGTCTCTGGGCGCTGCCCTATGGCTCCTGGGGTTGACCTGTGAAAAGCAGTCAAGCTGGACACCGCGGCATCGCCCCCCACTGCCACAGCCTCAGCCCTGCCCATCCCGCTCTCCCCCCGGACCCCTCATCCTATCTGCCAGCCCCTCTGGAACCCACACACCACCCCTCCACACCACCAGGAGGAGCAGTATGTGAGCGAAGCCACTGCCACTGATGTCTCTAGGATTTGCAGAGATGCCGAAACCATCACAGATGTGTGTAACAGCACTGATCTTCCTGAGGTGGAAATCATCAGTTTGCTTGAGGAGCAGTTGCCTCACTATAAGCTGAGAGCCGACACTATATACGGCTATGATCACGACGACTGGCTCCACACGCCTCTCATCTCCCCCGACGTCAACCTCGACCTGACCACTGAACAGATCGAGGAGACCCTCAAATATTTCCTCCTGTGTGCTGATCGAGTGGGCCAGATGACTAAGACATATAATGACATAGATGCTGTGACACGTCTCCTGGAGGAGAAAGAGCGGGATTTGGAGTTAGCGGCACGTATCGGCCAGTCTCTGCTGAAAAAGAACAAAAGCCTCACCGAGAGAAACACCTTCCTGGAGGAGCAGCTGGAGCACATACGAGAAGAGGTGTCTCAACTGCGTCATGATCTCCTGATGAAGGATGAGCTCCTGCAGTTCTACACGAGCGCGGCTGAGGAGAGTGATGGAGAGTCAGCTTCTACCACACCTATTCACAGAAATGATACATCCTTCACGGTCCCAAATTACCTCCCTCTGGATTCACTgcagaagaaactcaaagacCTGGAAGAAGAAAACATTGTGCTGCGATCAGAGGCAAATCACTTGGAGACAGAGACCATCTCATATGAAGAAAAGGAACAGCAGCTTGTAAATGACTGTGTGAAAGAGCTCAGAGATGCTAACATACAGATCTCCACGATTGCGGAGGAACTAGCCAAGAAAACAGAAGATGCCTCCCGTCAGCAAGAGGAGATCACACACCTGCTCTCTCAGATCGTGGACCTGCAGAAAAAAGCCAAATCTTATGCACTTGAAAATGAAGAGCTCACACAGCATCTGGGAGCCGCTAAAGATGCCCAGAGAGCACTAACAGCTGAGCTGAGAGAGCTGGAGGATAAATATGCCGAGTGTATGGAGATGCTTCATGAAGCTCAGGAGGAGCTGAAGAACTTCAGAAATAAAACAGTGCCTCTCAGCACACCACGACGATTCCACTCGCTCGGCCTCTTCCCCATGGACTCCTTAGCTGCTGAAATTGAAGGCACCATGAGGAAAGAGATTCAGATGTCTGACCCAGACGTGGAGGAGCAGagGTTGCAGCCGAAGCGTGTGTTTGAGACGGTGCGCAACGTCAACCAGAGTGTCCGACAGCGCTCCATGGGTCCATCGCCCATGAACATCCCAGGCTCCAATCAGACATCCAGCATGAACTCCAGGCGCTCCAGCTGTATGAGCACACCCAGATCCAGCATGTATGGTGGAGACGGCGTGGAGATAGACAACCGCACTAACAGTTTACTGCTGGAAACACAGTCTCCTCAGGATGGCTCGAACGACTCAAACAGAAAGCCTGGCACTCCTGGCACGCCGGGCTCTCACGACCTGCAGGCAGCGCTGCGGCGTCTCTCCCTCCGCAGGGACAATTACCTGAGCGAGAGGCGCTTCTTCGAGGAGGAGAGAGAGCGCAAACTCAACGCCCTGGCTGAAGACAAAAGCCAGTTCTACGAGGACAGCGAAGACGGCGGCGGTCCTCTCACTCCGGCCGACAGCATCATGTCCCTGGGCCTGAACTCAGTGTTCTCCATCTACAGCTCACGCTCGTACCTGCCCGAGAAACTGCAGATCGTCAAGCCTCTGGAAGGGTCAGCCACTCTTCACGCGTGGCAGCAGCTGGCTCAGCCTCACCTGGGGGGTCTTCTGGACCCCCGGCCGGGCGTCGTGACCAAGGGCTTCCGTCcgctggagctggagctggaggaGGTGTACCAGTTCACAGACCTGGAGGAAGACGAGCCAGGACAGCATTCCCAATCCTCCATCTCTTCCTCATGCATCAGCTCTCTACCCTGCTCTCCGGCTGCCAGACGCTCCCGAGGCAATCCAGAGCAGGAGGACCAGCAGAGCCCTGCGCAGGAGGAGGGTTCATCTGTTCATTTCCCTGGTAAATGTATGTCTCACAGCAGCTCCACGTACACCTTCACCACCTGCAGGATCCTGCACCCTTCAGATGAGCTCACCCGAGTCACACCCAGTCTCTTGTCAGGTCCATCACTGGCCTCTTGCGTGATGTCCAGTAGCAGTCTGCGCTCCACCCCAGTGTCCACCCCCTGCACACCTCGCCGACTCAGCCTGGCTGAGAGTTTCACCAACCTCCGTGACTCAACCAAGACCACCAGTACCTCTCTAGGCCTAGTGCGCCTCCTCCAGGAGAGGGGTATATCTGCTGCTGTCTATAACCCTCTCAGCTGGGACCGTGCAGATCAAGCTCTTCCAGCAGACCCCTTAACACCACACACTGCCAGCCCATTTCACACAGGCCCGGACACTCTCCCTTCCACCCCTCCGAACTCCCCCAGCAAGTCTAAACCCAGCAGTCCTGTGCTCCCTGTAGACTACAGCCCCTCAGATCCCCCCTATGAAACCTTCCTGGCCTCACGGCCAGCCAGCTCTATCCTAAAAGAAGTGCGGGAGGCGGACGAAAGGGCTCAAACAGACACGCAATGTCAGACTGAGGTCAGCGTGCAGAACCTAAGACTGGTGGACAAGCTGAAGAAGTTTAGCCTGGCTCCTAGAACTTTGACCCCAGGAATCGGGAGGCCAAGCCTGGGATTTGGCGCCCATGCAGTTGTGACTTCTCCCATTGGGGGACTGCCTGTGCTAAACTCAGGGATGAGAAGAAACCGCAGTTACCCAGCTATGGTTGGGGCTAGTATGGCTATGAAGGGCCCGGGGCCACCCAATGAGGACCTGCTGTTGCCTTCTGGGTCACCCAGACAAACTAGCCTCAAGAAAAAGTGAATGTTGCCTCTCTATCATCCCCTTTTGCCTTTTATTTGAGTGCctgttattaaagggatagtttacttgACAATTaaaacttactatttactcaccctcgagtTTCTTTCATCTCTTGGACACAAgattgttggaaacctgtaatgattgacctccatagtaggaaatacaaatactatggaaattaTGGTGTTTCATCactctttaaaatgtcttctgtTACATTCGACAGAAGATACTCTTTAGGGTTTGAAACaagcaaagggtgagtaaatagtgacagaattttcatttttgggtgaaccgccCCTTTAAGATGAGATTTGTATAGATTATTTTGTTATAACAGTTGCTATAACACCATCTCTTTTTTGTCTTTCTCTATCCATCCGACCAACATAAACAGTACACTTTATTTAGCACTGctacttgtttttgttgttatgtgTCGAAAATGGACAATTTGCACTTGCTAGCTGCGAGAAAATGTAGCATACAAAGCAGAAAACCCATGACAAAAATGATTTCCGAGTGCTTCTACTCAAGGATACGAAGAAAAATGGGAATTTGGTCTTCCGGTTTGACATTTCAAAGTTTGGTTAGTTTCATGATGCTAGCAAGAGCACTGATAGCACCTTAATGCTAATGGTAGCCCAGACATTGGTAAACAATGAAGTCttgttatttcatatttattattaggtcttttttgacatgttttaatTGCCATAATTTAGAGCTTCATATCAAGCCTCCTGAAAATCTGCTACAAATTTATTCCGTCTAGTCCAGCCAATCAAATACTGGCAGTCTATAACTCACTAAAATGGCTAATTGATTTGTAATATGATAGTAAGTACAGTATACTAACAGCTCAATCAAACGACTCTCCATAAAgagtgctgttgacttgaattgGGGATTATTTGCACATTAGCACAAACTCTGCTCTGTACATCCTCAAGAGTCAACCCTCTAGAGAGAAACCGAGACCACTGGGCTGTGACGGTGCTGCAGGTTTGAACTCGAAACAATCCTGTTCATGTCAAGTCATATACAATAACATCTTTTTGTTGAAGACCAACGTTATTTATAAGTGTATGTGTTGCTGTACATTGTGGTGGAATCGCAGGATCGGAGACTTGCACAACTACACATTTAATCGAAAAAGATATCAGGTTCAACTGAAGAATGACTGTATGTCTGCTGTGATTTTGGAATCTACTGATTGATAGGAGTCGTGTGTAAATTGAGTGAAGTATGTGTTGTAAGCTTTAAAGATTTCAAGGGTGCAATAGGAATAATTCATAGTgcctgatttttgttttgtttttgacagaCTGTATCATAATGGCTTCGCCCGCCATCATTCTGTATGCACTGGCATAAATACTGTAACTGTGTGTGATGTATTGGCCTAATGGTTTTTACCTGACCGTGCAAATATTTgagggaaatattttaaatgatgcatTGTCAaggaagcacagctgaaagcgcATGAGTCCTACTAAAGAATCGTTTTAGTTGAGGCAAATCGGATTTGTCGGGCGCAATCGTGTGCGTATGTTTGTGTGCGTTTAATCACAGCATGACCTTTGTTGAATGTGTTTCAGAACCTCAGAAGTGTCTGCCATGACAGAACATTCATTTCAGCGGTGTTTTTTTTCATCACAGTACTGAAGGGATGTTTTACTTGTACATTGTAAATGGTAATGCAAATAATTTAAACATGctaacttttttatataaaaaatgcaaaaaacttaACTTGAAGAGagcaaaaaaacagaaaatagaaaTGTTTGACTGGTGATTAGTGGAGTTTGTGAATTTTAGAAGCTCCACTTTGCAGAGGATCAATTAAACCAGTTGCC
>TCONS_00020471
ATGCAGAGGTTTGTGGAGGCAGATTACTACGAGCTGGACTGGTATTATGAAGAGTGCGCTGATGTCCTGTGTGCTGATCGAGTGGGCCAGATGACTAAGACATATAATGACATAGATGCTGTGACACGTCTCCTGGAGGAGAAAGAGCGGGATTTGGAGTTAGCGGCACGTATCGGCCAGTCTCTGCTGAAAAAGAACAAAAGCCTCACCGAGAGAAACACCTTCCTGGAGGAGCAGCTGGAGCACATACGAGAAGAGGTGTCTCAACTGCGTCATGATCTCCTGATGAAGGATGAGCTCCTGCAGTTCTACACGAGCGCGGCTGAGGAGAGTGATGGAGAGTCAGCTTCTACCACACCTATTCACAGAAATGATACATCCTTCACGGTCCCAAATTACCTCCCTCTGGATTCACTgcagaagaaactcaaagacCTGGAAGAAGAAAACATTGTGCTGCGATCAGAGGCAAATCACTTGGAGACAGAGACCATCTCATATGAAGAAAAGGAACAGCAGCTTGTAAATGACTGTGTGAAAGAGCTCAGAGATGCTAACATACAGATCTCCACGATTGCGGAGGAACTAGCCAAGAAAACAGAAGATGCCTCCCGTCAGCAAGAGGAGATCACACACCTGCTCTCTCAGATCGTGGACCTGCAGAAAAAAGCCAAATCTTATGCACTTGAAAATGAAGAGCTCACACAGCATCTGGGAGCCGCTAAAGATGCCCAGAGAGCACTAACAGCTGAGCTGAGAGAGCTGGAGGATAAATATGCCGAGTGTATGGAGATGCTTCATGAAGCTCAGGAGGAGCTGAAGAACTTCAGAAATAAAACAGTGCCTCTCAGCACACCACGACGATTCCACTCGCTCGGCCTCTTCCCCATGGACTCCTTAGCTGCTGAAATTGAAGGCACCATGAGGAAAGAGATTCAGATGTCTGACCCAGACGTGGAGGAGCAGagGTTGCAGCCGAAGCGTGTGTTTGAGACGGTGCGCAACGTCAACCAGAGTGTCCGACAGCGCTCCATGGGTCCATCGCCCATGAACATCCCAGGCTCCAATCAGACATCCAGCATGAACTCCAGGCGCTCCAGCTGTATGAGCACACCCAGATCCAGCATGTATGGTGGAGACGGCGTGGAGATAGACAACCGCACTAACAGTTTACTGCTGGAAACACAGTCTCCTCAGGATGGCTCGAACGACTCAAACAGAAAGCCTGGCACTCCTGGCACGCCGGGCTCTCACGACCTGCAGGCAGCGCTGCGGCGTCTCTCCCTCCGCAGGGACAATTACCTGAGCGAGAGGCGCTTCTTCGAGGAGGAGAGAGAGCGCAAACTCAACGCCCTGGCTGAAGACAAAAGCCAGTTCTACGAGGACAGCGAAGACGGCGGCGGTCCTCTCACTCCGGCCGACAGCATCATGTCCCTGGGCCTGAACTCAGTGTTCTCCATCTACAGCTCACGCTCGTACCTGCCCGAGAAACTGCAGATCGTCAAGCCTCTGGAAGGGTCAGCCACTCTTCACGCGTGGCAGCAGCTGGCTCAGCCTCACCTGGGGGGTCTTCTGGACCCCCGGCCGGGCGTCGTGACCAAGGGCTTCCGTCcgctggagctggagctggaggaGGTGTACCAGTTCACAGACCTGGAGGAAGACGAGCCAGGACAGCATTCCCAATCCTCCATCTCTTCCTCATGCATCAGCTCTCTACCCTGCTCTCCGGCTGCCAGACGCTCCCGAGGCAATCCAGAGCAGGAGGACCAGCAGAGCCCTGCGCAGGAGGAGGGTTCATCTGGTGAGAGACCCTCGTAA
>TCONS_00020472
CGCCGTGGCTGATCCTGAAGTAGTGGAAAATGTAAGTTTGGGCGAGTGAACAGAGAAAGCCCGTGGCTGAAGAAACATGAATGTGTGTAACAGCACTGATCTTCCTGAGGTGGAAATCATCAGTTTGCTTGAGGAGCAGTTGCCTCACTATAAGCTGAGAGCCGACACTATATACGGCTATGATCACGACGACTGGCTCCACACGCCTCTCATCTCCCCCGACGTCAACCTCGACCTGACCACTGAACAGATCGAGGAGACCCTCAAATATTTCCTCCTGTGTGCTGATCGAGTGGGCCAGATGACTAAGACATATAATGACATAGATGCTGTGACACGTCTCCTGGAGGAGAAAGAGCGGGATTTGGAGTTAGCGGCACGTATCGGCCAGTCTCTGCTGAAAAAGAACAAAAGCCTCACCGAG

Function

symbol description
trak1a Predicted to enable GABA receptor binding activity and myosin binding activity. Predicted to be involved in several processes, including endosome to lysosome transport; mitochondrion distribution; and organelle transport along microtubule. Predicted to be located in early endosome. Predicted to be active in cytoplasmic vesicle; dendrite; and mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 68. Orthologous to human TRAK1 (trafficking kinesin protein 1).

GO:

id name namespace
GO:0006605 protein targeting biological_process
GO:0048311 mitochondrion distribution biological_process
GO:0098957 anterograde axonal transport of mitochondrion biological_process
GO:0047496 vesicle transport along microtubule biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0022008 neurogenesis biological_process
GO:0008089 anterograde axonal transport biological_process
GO:0008104 protein localization biological_process
GO:0030425 dendrite cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005102 signaling receptor binding molecular_function
GO:0050811 GABA receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-182 Predicted to enable GABA receptor binding activity and myosin binding activity. Predicted to be involved in several processes, including endosome to lysosome transport; mitochondrion distribution; and organelle transport along microtubule. Predicted to be located in early endosome. Predicted to be active in cytoplasmic vesicle; dendrite; and mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 68. Orthologous to human TRAK1 (trafficking kinesin protein 1).

Ensembl:

ensembl_id ENSDARG00000041304

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020470 False 5009 mRNA 0.48 16 5786770 5873866
TCONS_00020471 False 1821 mRNA 0.54 13 5800580 5844881
TCONS_00020472 True 424 processed_transcript 0.50 4 5821297 5857981

Neighbor

gene id symbol gene type direction distance location
XLOC_010414 NA coding downstream 728 5746308 ~ 5786042 (-)
XLOC_010413 ndufa3 coding downstream 65384 5717760 ~ 5721386 (-)
XLOC_010412 si:dkey-283b15.2 coding downstream 114908 5650495 ~ 5671862 (-)
XLOC_010411 NA coding downstream 143032 5636286 ~ 5643738 (-)
XLOC_010410 CR848788.1 coding downstream 174290 5607138 ~ 5612480 (-)
XLOC_010417 ctnnb1 coding upstream 308635 6182501 ~ 6205790 (-)
XLOC_010418 NA coding upstream 374157 6248023 ~ 6249246 (-)
XLOC_010419 NA coding upstream 417307 6291173 ~ 6351690 (-)
XLOC_010420 scgn coding upstream 482594 6356460 ~ 6377672 (-)
XLOC_010421 NA coding upstream 509664 6383530 ~ 6386642 (-)
XLOC_010626 CR392024.2 misc upstream 15021246 20895112 ~ 20895175 (-)
XLOC_010409 NA non-coding downstream 198150 5453180 ~ 5588620 (-)
XLOC_010408 NA non-coding downstream 613327 5169775 ~ 5173443 (-)
XLOC_010405 CU694364.1 non-coding downstream 679353 5107298 ~ 5107417 (-)
XLOC_010424 NA non-coding upstream 602150 6476016 ~ 6484227 (-)
XLOC_010425 NA non-coding upstream 638480 6512346 ~ 6556501 (-)

Expression


Co-expression Network