G269581


Basic Information

Item Value
gene id G269581
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3761827 ~ 3770605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU305917
TATACTCTTCCACCGCTGTGTCAACAGTGGCTTATCATGTCCGATAGCTGGAGAAAACAACAAACCCACTGCAATGCTTGGTATGGAACAACATGTGACATGTGTCGAGAGGAAAGTAACCTGAAAAATAGACTTCTGTTCTCTGTTTGCGTGTGTCATTTCCTGAGTCTGTCTGCGTTTGCAGGTTGTCATAGGCTGAGACATTAGTGGGGTGTGCTGTGCATGAATCAGGGAGACTGACTAAACGTCTGTTCTTTGCTTATCAACGTGATGGATGGAATCCTCAGAGATAAGATGAAGTGTGGGCACAGAGTCATTGATGCTGCTATCTGATCTGGAAGACTCTCCTGTAGACTAGATTTAACTCTGATATTCTTGTCTGTGAAACTGAGTACAGAAGCTCACAGATTCACTGATTATAATGTGGAGAGTGAAGACATTACGAAAGAATAAGAGAGTTTCTAGATTTGTTTTCAATCTGGGCTGTGCTTCCCGAACGACATAACTCGTTGCTTCTCTACCATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCATAAGGGACAAGGCTGAAGACCTTTATTGGATGCCTGTGGTCTTCGGGCCCTCAGACAACACTGCATCACTCATCGGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTCCCGAAACCACTGTCGGTAAATGCAATCTGCCGTGCCATCTGCAGATGCCAACTACAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGAAGCGTTGTCATGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGTGTTCTATGGTCCAAATTTGACATTCTTGTTGGAAATCAAGGCTAAAGAGGAGGGAGACCTCCCAGCGTGTTATCAGCGTTCAGGTCAAAAGCCAGCATCTCTGATGGTATGGGGGTGCATAAATGCATACAGTATGGGCAGCTTGCATGTTTTGGAAGGCAATATGAATGCTGAAAGGTATAGAAAGGTTTCCAGATGACGTCTATTTCAGGGAAGGCTTTGTGTATTTCAGCAAGACAATGCAAAACCACATACTGCAGCTATTACAACAACATGGCTTCATCATAGAAGAGTCCGGGTGCTGAATTGGCCTGCCTGGAGTCCAAATCTTTCACCTATAGAGAATATTTGGCGCACCATTAAACGAAAAATATGTCAAAGACGACCACAAACTCTTCAGCAGCTGGAAACCTATATCAGGCAAGAATGGGACCAAATTCCAACACCAAAACTCCAGAAACTCACAACCTCAATGCCCAGATGTCTTCAAACTGTTTTGAAAAGAAGAGGAGATGCTACACCATGGAAAACATGCCCCCGTCCCAACTATTTTGAGACCTGTGGCAGGCATCAAATTTGAAATGAGCTCATTTTGTGCATAAAATTGTAAAATTTCTCTGTTTAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATCGGCTTATGTGA
>TU305914
CGTGATGGATGGAATCCTCAGAGATAAGATGAAGTGTGGGCACAGAGTCATTGATGCTGCTATCTGATCTGGAAGACTCTCCTGTAGACTAGATTTAACTCTGATATTCTTGTCTGTGAAACTGAGTACAGAAGCTCACAGATTCACTGATTATAATGTGGAGAGTGAAGACATTACGAAAGAATAAGAGAGTTTCTAGATTTGTTTTCAATCTGGGCTGTGCTTCCCGAACGACATAACTCGTTGCTTCTCTACCATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCATAAGGGACAAGGCTGAAGACCTTTATTGGATGCCTGTGGTCTTCGGGCCCTCAGACAACACTGCATCACTCATCGGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTCCCGAAACCACTGTCGGTAAATGCAATCTGCCGTGCCATCTGCAGATGCCAACTACAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGAAGCGTTGTCATGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGTGTTCTATGGTCCAAATTTGACATTCTTGTTGGAAATCAAGGCTAAAGAGGAGGGAGACCTCCCAGCGTGTTATCAGCGTTCAGGTCAAAAGCCAGCATCTCTGATGGTATGGGGGTGCATAAATGCATACAGTATGGGCAGCTTGCATGTTTTGGAAGGCAATATGAATGCTGAAAGGTATAGAAAGGTTTCCAGATGACGTCTATTTCAGGGAAGGCTTTGTGTATTTCAGCAAGACAATGCAAAACCACATACTGCAGCTATTACAACAACATGGCTTCATCATAGAAGAGTCCGGGTGCTGAATTGGCCTGCCTGGAGTCCAAATCTTTCACCTATAGAGAATATTTGGCGCACCATTAAACGAAAAATATGTCAAAGACGACCACAAACTCTTCAGCAGCTGGAAACCTATATCAGGCAAGAATGGGACCAAATTCCAACACCAAAACTCCAGAAACTCACAACCTCAATGCCCAGATGTCTTCAAACTGTTTTGAAAAGAAGAGGAGATGCTACACCATGGAAAACATGCCCCCGTCCCAACTATTTTGAGACCTGTGGCAGGCATCAAATTTGAAATGAGCTCATTTTGTGCATAAAATTGTAAAATTTCTCTGTTTAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATCGGCTTATGTGA
>TU305915
CGTGATGGATGGAATCCTCAGAGATAAGATGAAGTGTGGGCACAGAGTCATTGATGCTGCTATCTGATCTGGAAGACTCTCCTGTAGACTAGATTTAACTCTGATATTCTTGTCTGTGAAACTGAGTACAGAAGCTCACAGATTCACTGATTATAATGTGGAGAGTGAAGACATTACGAAAGAATAAGAGAGTTTCTAGATTTGTTTTCAATCTGGGCTGTGCTTCCCGAACGACATAACTCGTTGCTTCTCTACCATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCATAAGGGACAAGGCTGAAGACCTTTATTGGATGCCTGTGGTCTTCGGGCCCTCAGACAACACTGCATCACTCATCGGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTCCCGAAACCACTGTCGGTAAATGCAATCTGCCGTGCCATCTGCAGATGCCAACTACAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGAAGCGTTGTCATGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGTGTTCTATGGTCCAAATTTGACATTCTTGTTGGAAATCAAGGCTAAAGAGGAGGGAGACCTCCCAGCGTGTTATCAGCGTTCAGGTCAAAAGCCAGCATCTCTGATGGTATGGGGGTGCATAAATGCATACAGTATGGGCAGCTTGCATGTTTTGGAAGGCAATATGAATGCTGAAAGGTATAGAAAGGTTTCCAGATGACGTCTATTTCAGGGAAGGCTTTGTGTATTTCAGCAAGACAATGCAAAACCACATACTGCAGCTATTACAACAACATGGCTTCATCATAGAAGAGTCCGGGTGCTGAATTGGCCTGCCTGGAGTCCAAATCTTTCACCTATAGAGAATATTTGGCGCACCATTAAACGAAAAATATGTCAAAGACGACCACAAACTCTTCAGCAGCTGGAAACCTATATCAGGCAAGAATGGGACCAAATTCCAACACCAAAACTCCAGAAACTCACAACCTCAATGCCCAGATGTCTTCAAACTGTTTTGAAAAGAAGAGGAGATGCTACACCATGGAAAACATGCCCCCGTCCCAACTATTTTGAGACCTGTGGCAGGCATCAAATTTGAAATGAGCTCATTTTGTGCATAAAATTGTAAAATTTCTCTGTTTAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATCGGCTTATGTGATTTGAAAGTCTTTTAGTTTTCATTTTATTCAACTTTAAAAAACAACCTTTCCGGAATTTGAGTTGTACTTGAGAGTTTATTCCTGAGTGTTTTGTTTCTTTATGTTCTTGGAAAA
>TU305918
CGTGATGGATGGAATCCTCAGAGATAAGATGAAGTGTGGGCACAGAGTCATTGATGCTGCTATCTGATCTGGAAGACTCTCCTGTAGACTAGATTTAACTCTGATATTCTTGTCTGTGAAACTGAGTACAGAAGCTCACAGATTCACTGATTATAATGTGGAGAGTGAAGACATTACGAAAGAATAAGAGAGGTGAGAGAAATCATTGTCTCTAACTGACAAATTTACTACTGTAGTTGTCTTTTTCATTGTCAGTTTAGTAGAACAAACTTTTGAGATTAAAATTGCATTGTAAGTATTTTTACACTTTCAGTCTTAAACTATAAAATCCAGCATAAAATTGTATATTATTTGTTTTATAAATAGAATAAAAGTGTTGTTTTCTTATAATCAAATGTATCAAAAACAACATTATTGTACAGTAACATTTGGCATATTTTTGTATCATCCTGCTTTTATCAGTTTTTCACAGTGTTTGAGTTCTCTCTACACCATGTGTCTCAAGATACATTTTATGACAATCTTGCGATCTTTTGAAACATTCCACCAAGTAACATCTACAACAAACGAAATGTTACGTCTCTATGGAAACAAAAGGCTCCTCGGAGGCTTTGGAATTTAAAAAACACAGGGTTGAAAATAAGTTACCAAGTAAAGATTATAATGCCTGGGAACTATAGCACAAGCTGTTCACTTGCAGGATGAACTCTGCAATGAAGGATTTCCATTTAATACCTTGTAAAACATATTTTGAAATAAACATTTACATAAACTTTTCTTAACTTTATGATAACTTACCATAAACAATTTTAAATGTCACATTATTTATGAATAGGTAAAATGTAAAAAATAAATAAATAAAAAAAAATTACACATGTTAAGAGTTTCTGAGATGTGCAAGTGCTTTAAAAGGGGTAAAGCTTCAGTAAAATAAATTCAGGATTACATTGTAATTTTTGTAACACTTCATTAAGGTTCAGTTTGTTAACATTAGTAACTACATTAGGTATCATGAACTAACAATATGCAATTCTTTTACAACATTTATTAATCTTGGTTAATGTTAAATTTTAGATACTAATAATGTTTTACAACAAGTTGTATAAGTTATAGAGCACCTATTATGCCACTTTTACAAGATGTAATATAAGTCTCTGGTGTCAGAAGTGTCTTTCCAGAAGAGGGCGAAGCTTTAACTACTCGCGCTTTGCATACTCTACATCAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTGTCATCAGTCGGACACTGATGGAGAGACTCAAGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGTTTCTAGATTTGTTTTCAATCTGGGCTGTGCTTCCCGAACGACATAACTCGTTGCTTCTCTACCATCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCATAAGGGACAAGGCTGAAGACCTTTATTGGATGCCTGTGGTCTTCGGGCCCTCAGACAACACTGCATCACTCATCGGCATGATTGTGTCAATGACATTACTAAATGGGCCCAGGAATACTTCCCGAAACCACTGTCGGTAAATGCAATCTGCCGTGCCATCTGCAGATGCCAACTACAGCTCTATCATGCAAAAAGGAAGCCATATGTGAACATGGTCCAGAAGCGTTGTCATGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGTGTTCTATGGTCCAAATTTGACATTCTTGTTGGAAATCAAGGCTAAAGAGGAGGGAGACCTCCCAGCGTGTTATCAGCGTTCAGGTCAAAAGCCAGCATCTCTGATGGTATGGGGGTGCATAAATGCATACAGTATGGGCAGCTTGCATGTTTTGGAAGGCAATATGAATGCTGAAAGGTATAGAAAGGTTTCCAGATGACGTCTATTTCAGGGAAGGCTTTGTGTATTTCAGCAAGACAATGCAAAACCACATACTGCAGCTATTACAACAACATGGCTTCATCATAGAAGAGTCCGGGTGCTGAATTGGCCTGCCTGGAGTCCAAATCTTTCACCTATAGAGAATATTTGGCGCACCATTAAACGAAAAATATGTCAAAGACGACCACAAACTCTTCAGCAGCTGGAAACCTATATCAGGCAAGAATGGGACCAAATTCCAACACCAAAACTCCAGAAACTCACAACCTCAATGCCCAGATGTCTTCAAACTGTTTTGAAAAGAAGAGGAGATGCTACACCATGGAAAACATGCCCCCGTCCCAACTATTTTGAGACCTGTGGCAGGCATCAAATTTGAAATGAGCTCATTTTGTGCATAAAATTGTAAAATTTCTCTGTTTAAACATTTGTTATGTTATCTATGTTCTATTGTGAATAAAATATCGGCTTATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305917 False 1524 lncRNA 0.43 2 3761827 3770490
TU305914 False 1258 lncRNA 0.42 2 3762093 3770490
TU305915 False 1373 lncRNA 0.41 2 3762093 3770605
TU305918 True 2426 lncRNA 0.37 2 3762093 3770490

Neighbor

gene id symbol gene type direction distance location
CI01000065_03709249_03716992 NA coding upstream 43919 3709144 ~ 3717908 (+)
CI01000065_03692428_03692874 NA coding upstream 68407 3692428 ~ 3693420 (+)
CI01000065_03486630_03494354 NA coding upstream 266087 3486567 ~ 3495740 (+)
CI01000065_03398558_03399971 CNIH4 coding upstream 361402 3398558 ~ 3400425 (+)
CI01000065_03344678_03368295 NA coding upstream 393355 3344331 ~ 3368472 (+)
CI01000065_03815841_03816140 NA coding downstream 42253 3812858 ~ 3816590 (+)
CI01000065_03980525_03983765 NA coding downstream 209920 3980525 ~ 3984923 (+)
CI01000065_03986974_04006773 CYP4T8 coding downstream 216369 3986974 ~ 4007259 (+)
CI01000065_04008274_04010105 NA coding downstream 237669 4008274 ~ 4010194 (+)
CI01000065_04044257_04051771 THEMIS2 coding downstream 273652 4044257 ~ 4052283 (+)
G269573 NA non-coding upstream 14424 3747188 ~ 3747403 (+)
G269548 NA non-coding upstream 39218 3722294 ~ 3722609 (+)
G269546 NA non-coding upstream 51585 3710008 ~ 3710242 (+)
G269545 NA non-coding upstream 51831 3709728 ~ 3709996 (+)
G269543 NA non-coding upstream 55950 3705676 ~ 3705877 (+)
G269586 NA non-coding downstream 16033 3786638 ~ 3786927 (+)
G269587 NA non-coding downstream 16592 3787197 ~ 3787434 (+)
G269567 NA non-coding downstream 22640 3793245 ~ 3803674 (+)
G269569 NA non-coding downstream 27552 3798157 ~ 3802643 (+)
G269592 NA non-coding downstream 53987 3824592 ~ 3824811 (+)
G269225 NA other upstream 208703 3552804 ~ 3553214 (+)
G269181 NA other upstream 298899 3458957 ~ 3462928 (+)
G268805 NA other upstream 1123622 2608907 ~ 2638205 (+)
G268525 NA other upstream 1521829 2239159 ~ 2239998 (+)
G267577 NA other upstream 2679172 1082153 ~ 1082655 (+)

Expression


Co-expression Network