G269567


Basic Information

Item Value
gene id G269567
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3793245 ~ 3803674 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU305900
AATAAATATATTACTGTGAAAATATACTGAAAATGTGGCTGTACATGGAAAACAAACAAAGAAAATAAAACATTTCTGGCACTTTCACACAAAGAGAATGTTTTGTTTTCTCCTCCACAGATCTCATATCTCCACCAAACTGATCATTGATACAAAAATGTTCAACAACAACAAAAAAGGCGCTTTCAGGAATGTTGAAGTGTTTGTCTTTCTTTTCATTTGTATTTCGTTCTATAAAGGCTGTCCACAGTTTTTCAGATTGATGACAATGTCGATAGGAAACAAAGCAAAACAATATCAACAATAACACTGCATATAAATAGATCAAATTAAATACACAGAATACTGAACATATTCTAACATTATAAATTAGATGAGGTGAACTACATAAAGGGATATTAGATATGTATATACAGACATTGTGTGGTAATGAACAGTTCCTAAAGTTGTGTGCAATATTCTCTTTGGAAAATGTTACGAACCTTAAATATCTGTGTTATCTTTTACTACTGCTGTGAACTGAATGATTCTATTCCTTGGCAAAAGTCAAAAGATTCTTTCTTTTCTTTTTTTTCTCAATTTGCATTTTGTCACATTTATCTTTTCTTCTTGTTCTTTATTTCCATATATACATACATGTAATATCCCTTTAGTATTTTCACACCAAGTCCTATAGGATGTTAGTCAGTACAGGTGTCTTTTTGACTAAGAGTTCACCCAAGTAAGAGTGACATCACAGAAATAGATAGTTCCGCATTCGTATCCCGTGCCTGGACCCACTGTTCCGAACAGTCCGAAAGAATGTGTCACTTCCTCTCCTTTGATTTACAGTCTGTAACTGTTCATATAAAGGGGTGGAGATTATCGTTTGCACCTCTCAGTAAAGTCTTGGACATTCAATCCGAGTCTTTAATTGGGAATCCACAGCCGGCCGGTCCAGTGAAGCATTACCTCACCGTGTTCTGTCCAATCACAGGCCCAGGTGCAGTGACACTGCAATATATCCCATTCACACGCCAAGCAGCGTCTTCGTTTAGTTGTTTGTAGTAATTCAGATGATAGCAGCGACACACATTGTCATTGTCATTTAATATATATAATATATATTCTATATATTAATATCTTAAAAATATACATTGGGATGATATCTCCTGCCCTCATTTCATTCTTTGTCTTTTGTTCAGGGTAGTGTTTGTAGTTCGTCCAGGGAATGCATCCTCAGGTTTAAAAAGTGCTGTGCTGTAAAAAAAATTCCTTCATTCAGTGTTCTGCCCAGCGTTCCGCTCATCATCTTGGTTTTTCACATTTTCTTTCTTTGCTTTGACTTCTGCCTTTGGCCTGAAAAAGACAGATGCAACAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU305900 True 1361 lncRNA 0.36 2 3793245 3803674

Neighbor

gene id symbol gene type direction distance location
CI01000065_03709249_03716992 NA coding upstream 75337 3709144 ~ 3717908 (+)
CI01000065_03692428_03692874 NA coding upstream 99825 3692428 ~ 3693420 (+)
CI01000065_03486630_03494354 NA coding upstream 297505 3486567 ~ 3495740 (+)
CI01000065_03398558_03399971 CNIH4 coding upstream 392820 3398558 ~ 3400425 (+)
CI01000065_03344678_03368295 NA coding upstream 424773 3344331 ~ 3368472 (+)
CI01000065_03815841_03816140 NA coding downstream 9184 3812858 ~ 3816590 (+)
CI01000065_03980525_03983765 NA coding downstream 176851 3980525 ~ 3984923 (+)
CI01000065_03986974_04006773 CYP4T8 coding downstream 183300 3986974 ~ 4007259 (+)
CI01000065_04008274_04010105 NA coding downstream 204600 4008274 ~ 4010194 (+)
CI01000065_04044257_04051771 THEMIS2 coding downstream 240583 4044257 ~ 4052283 (+)
G269587 NA non-coding upstream 5811 3787197 ~ 3787434 (+)
G269586 NA non-coding upstream 6318 3786638 ~ 3786927 (+)
G269581 NA non-coding upstream 22640 3761827 ~ 3770605 (+)
G269573 NA non-coding upstream 45842 3747188 ~ 3747403 (+)
G269548 NA non-coding upstream 70636 3722294 ~ 3722609 (+)
G269592 NA non-coding downstream 20918 3824592 ~ 3824811 (+)
G269605 NA non-coding downstream 52325 3855999 ~ 3856276 (+)
G269607 NA non-coding downstream 55849 3859523 ~ 3859979 (+)
G269733 NA non-coding downstream 99705 3903379 ~ 3903627 (+)
G269734 NA non-coding downstream 100417 3904091 ~ 3904490 (+)
G269225 NA other upstream 240121 3552804 ~ 3553214 (+)
G269181 NA other upstream 330317 3458957 ~ 3462928 (+)
G268805 NA other upstream 1155040 2608907 ~ 2638205 (+)
G268525 NA other upstream 1553247 2239159 ~ 2239998 (+)
G267577 NA other upstream 2710590 1082153 ~ 1082655 (+)

Expression


Co-expression Network