Gene
RNA
| Item | Value |
|---|---|
| gene id | G269605 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 3855999 ~ 3856276 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU305942 | True | 278 | lncRNA | 0.30 | 1 | 3855999 | 3856276 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_03815841_03816140 | NA | coding | upstream | 39409 | 3812858 ~ 3816590 (+) |
| CI01000065_03709249_03716992 | NA | coding | upstream | 138091 | 3709144 ~ 3717908 (+) |
| CI01000065_03692428_03692874 | NA | coding | upstream | 162579 | 3692428 ~ 3693420 (+) |
| CI01000065_03486630_03494354 | NA | coding | upstream | 360259 | 3486567 ~ 3495740 (+) |
| CI01000065_03398558_03399971 | CNIH4 | coding | upstream | 455574 | 3398558 ~ 3400425 (+) |
| CI01000065_03980525_03983765 | NA | coding | downstream | 124249 | 3980525 ~ 3984923 (+) |
| CI01000065_03986974_04006773 | CYP4T8 | coding | downstream | 130698 | 3986974 ~ 4007259 (+) |
| CI01000065_04008274_04010105 | NA | coding | downstream | 151998 | 4008274 ~ 4010194 (+) |
| CI01000065_04044257_04051771 | THEMIS2 | coding | downstream | 187981 | 4044257 ~ 4052283 (+) |
| CI01000065_04081314_04103789 | NA | coding | downstream | 225038 | 4081314 ~ 4103961 (+) |
| G269592 | NA | non-coding | upstream | 31188 | 3824592 ~ 3824811 (+) |
| G269567 | NA | non-coding | upstream | 52325 | 3793245 ~ 3803674 (+) |
| G269569 | NA | non-coding | upstream | 53356 | 3798157 ~ 3802643 (+) |
| G269587 | NA | non-coding | upstream | 68565 | 3787197 ~ 3787434 (+) |
| G269586 | NA | non-coding | upstream | 69072 | 3786638 ~ 3786927 (+) |
| G269607 | NA | non-coding | downstream | 3247 | 3859523 ~ 3859979 (+) |
| G269733 | NA | non-coding | downstream | 47103 | 3903379 ~ 3903627 (+) |
| G269734 | NA | non-coding | downstream | 47815 | 3904091 ~ 3904490 (+) |
| G269746 | NA | non-coding | downstream | 53401 | 3909677 ~ 3909913 (+) |
| G269790 | NA | non-coding | downstream | 86077 | 3942353 ~ 3942678 (+) |
| G269225 | NA | other | upstream | 302875 | 3552804 ~ 3553214 (+) |
| G269181 | NA | other | upstream | 393071 | 3458957 ~ 3462928 (+) |
| G268805 | NA | other | upstream | 1217794 | 2608907 ~ 2638205 (+) |
| G268525 | NA | other | upstream | 1616001 | 2239159 ~ 2239998 (+) |
| G267577 | NA | other | upstream | 2773344 | 1082153 ~ 1082655 (+) |
