XLOC_010419


Basic Information

Item Value
gene id XLOC_010419
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6291173 ~ 6351690 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022091
GGCTAACTTCCTTTACGTTTGCAAACCAGCTCGAGCATCAGCTACACACAGTCAACACTCTTTCAACAgTTTGTATGACCAGCTCTTTTCATCTGAGGATGCCTCTCTTCGGCTGGAATGTTCCAAGGGATCCAGGTTATCCTGATGTGGAGCGTGATCAGGTATAAGAGGAAGAGGATGACGCACCTTCATTTCTGAAACCCAACCATCTAAGAACAGTTTCTCCAAAATCCCCACAGACACATAGTCATGCATTCTCGTCCTCGCTCCCCGCGCTTCAGGTCACGTTGTCTGCGGCCTGCTCTCTTCACACCCCGGCATATGTTGCAGCAGAGGCTGGATCAGTGCCACATGCTAGCCTGCTGCCCGAGCTCCTCTCCCTGCTCTCCGCCACCTGTGTTCCCTCCCTCAGCGCCAGGCTCCAGGCTCTCTGGCTCCGACACACACCTGTGACTGGGAATGAGGCTCCAGCATAAACCTCTCCTCCACCTCCGAGCTGTCACTCATCCAACTCTTCCTCTGCACAAGTTTTGCAGAAAACCCCCATGGAAACACTACACAATCTCCTCAAATTAAGCACATCAACCCACTCCTGTCAACTGATAGGAAATTCAGAACAGTGGCAAAGTAGGACAGCAGTGATTTTCTTTTCATTAGAATGTTTTCCAACTCACCCACACGtcgttccaaacatgtttgaaatTCTTACTTCCACGGAAGacaaaaggagatgttttgaagaatgcccACACTGCCTTTTTATAGATACTgtatcattattaaaaataatagttctTGTGCAGTGATAAGAACCATTATAGTTCTTAAAAACAGTACACCAATATACATCATAATGAATCATTTAAGAagagttaaatatttatttttaagtttaaagcAGAAAAGTAGACTGCCATCTCGCTTTAATCCAGTTAATATTAAAGTACCTGATGTTTGAATAAAATGTTTCTTGAaggctttgattttttttttttttttttttttatcctgtgCATTTTGAATTATCCCTAGAGAAATGAGTGATTGAAATCGCAAATTCTGGGCAAAATTTCCTTACTATTGCTTGAGGTGGTTTTGGATTCATGCAAAAAAGGGTTCATGTGAATAAAGGAAGATGGAGATGCGTTTGCCGAATAAACTCAGATTCCATACAGCTTGTCTGGTTTACTGTTGTTTACCAGTTACCAatacagtcagcc
>TCONS_00022090
GGCTAACTTCCTTTACGTTTGCAAACCAGCTCGAGCATCAGCTACACACAGTCAACACTCTTTCAACAgTTTGTATGACCAGCTCTTTTCATCTGAGGATGCCTCTCTTCGGCTGGAATGTTCCAAGGGATCCAGGTTATCCTGATGTGGAGCGTGATCAGGTATAAGAGGAAGAGGATGACGGTGAGCACCCAGTAAAAGACTGACACAAACATTACCCAGCGCAGCGCAGGAACATGCAGCACCTTCATTTCTGAAACCCAACCATCTAAGAACAGTTTCTCCAAAATCCCCACAGACACATAGTCATGCATTCTCGTCCTCGCTCCCCGCGCTTCAGGTCACGTTGTCTGCGGCCTGCTCTCTTCACACCCCGGCATATGTTGCAGCAGAGGCTGGATCAGTGCCACATGCTAGCCTGCTGCCCGAGCTCCTCTCCCTGCTCTCCGCCACCTGTGTTCCCTCCCTCAGCGCCAGGCTCCAGGCTCTCTGGCTCCGACACACACCTGTGACTGGGAATGAGGCTCCAGCATAAACCTCTCCTCCACCTCCGAGCTGTCACTCATCCAACTCTTCCTCTGCACAAGTTTTGCAGAAAACCCCCATGGAAACACTACACAATCTCCTCAAATTAAGCACATCAACCCACTCCTGTCAACTGATAGGAAATTCAGAACAGTGGCAAAGTAGGACAGCAGTGATTTTCTTTTCATTAGAATGTTTTCCAACTCACCCACACGtcgttccaaacatgtttgaaatTCTTACTTCCACGGAAGacaaaaggagatgttttgaagaatgcccACACTGCCTTTTTATAGATACTgtatcattattaaaaataatagttctTGTGCAGTGATAAGAACCATTATAGTTCTTAAAAACAGTACACCAATATACATCATAATGAATCATTTAAGAagagttaaatatttatttttaagtttaaagcAGAAAAGTAGACTGCCATCTCGCTTTAATCCAGTTAATATTAAAGTACCTGATGTTTGAATAAAATGTTTCTTGAaggctttgattttttttttttttttttttttatcctgtgCATTTTGAATTATCCCTAGAGAAATGAGTGATTGAAATCGCAAATTCTGGGCAAAATTTCCTTACTATTGCTTGAGGTGGTTTTGGATTCATGCAAAAAAGGGTTCATGTGAATAAAGGAAGATGGAGATGCGTTTGCCGAATAAACTCAGATTCCATACAGCTTGTCTGGTTTACTGTTGTTTACCAGTTACCAatacagtcagcc
>TCONS_00022093
CAAAAACACTATGGTGTTTATAACttacaagtgtttttatttttcacgTCGAACGGCAGAAAACTTAATGACAATCACATTCAAACTGCATCCTGAGTGCtgataaaaattaaatgtaatcaatTTCTATCGAAGTTGACCACAAGATGACACTATAGGCTAACTTTGCATTTTAGCTAAGAGGCTAACTTCCTTTACGTTTGCAAACCAGTTAGGTGACAAAACACCTGCAGCTCATTAACTTTACTTGATTCTGGAGCTCGAGCATCAGCTACACACAGTCAACACTCTTTCAACAgTTTGTATGACCAGCTCTTTTCATCTGAGGATGCCTCTCTTCGGCTGGAATGTTCCAAGGGATCCAGGTTATCCTGATGTGGAGCGTGATCAGGTATAAGAGGAAGAGGATGACGGTGAGCACCCAGTAAAAGACTGACACAAACATTACCCAGCGCAGCGCAGGAACATGCAGCACCTTCATTTCTGAAACCCAACCATCTAAGAACAGTTTCTCCAAAATCCCCACAGACACATAGTCATGCATTCTCGTCCTCGCTCCCCGCGCTTCAGGTCACGTTGTCTGCGGCCTGCTCTCTTCACACCCCGGCATATGTTGCAGCAGAGGCTGGATCAGTGCCACATGCTAGCCTGCTGCCCGAGCTCCTCTCCCTGCTCTCCGCCACCTGTGTTCCCTCCCTCAGCGCCAGGCTCCAGGCTCTCTGGCTCCGACACACACCTGTGACTGGGAATGAGGCTCCAGCATAAACCTCTCCTCCACCTCCGAGCTGTCACTCATCCAACTCTTCCTCTGCACAAGTTTTGCAGAAAACCCCCATGGAAACACTACACAATCTCCTCAAATTAAGCACATCAACCCACTCCTGTCAACTGATAGGAAATTCAGAACAGTGGCAAAGTAGGACAGCAGTGATTTTCTTTTCATTAGAATGTTTTCCAACTCACCCACACGtcgttccaaacatgtttgaaatTCTTACTTCCACGGAAGacaaaaggagatgttttgaagaatgcccACACTGCCTTTTTATAGATACTgtatcattattaaaaataatagttctTGTGCAGTGATAAGAACCATTATAGTTCTTAAAAACAGTACACCAATATACATCATAATGAATCATTTAAGAagagttaaatatttatttttaagtttaaagcAGAAAAGTAGACTGCCATCTCGCTTTAATCCAGTTAATATTAAAGTACCTGATGTTTGAATAAAATGTTTCTTGAaggctttgattttttttttttttttttttttatcctgtgCATTTTGAATTATCCCTAGAGAAATGAGTGATTGAAATCGCAAATTCTGGGCAAAATTTCCTTACTATTGCTTGAGGTGGTTTTGGATTCATGCAAAAAAGGGTTCATGTGAATAAAGGAAGATGGAGATGCGTTTGCCGAATAAACTCAGATTCCATACAGCTTGTCTGGTTTACTGTTGTTTACCAGTTACCAatacagtcagcc
>TCONS_00022092
CAAAAACACTATGGTGTTTATAACttacaagtgtttttatttttcacgTCGAACGGCAGAAAACTTAATGACAATCACATTCAAACTGCATCCTGAGTGCtgataaaaattaaatgtaatcaatTTCTATCGAAGTTGACCACAAGATGACACTATAGGCTAACTTTGCATTTTAGCTAAGAGGCTAACTTCCTTTACGTTTGCAAACCAGGTAAGCTTCTCAAAGCACGTcgtgaaaaatgtataaaatgtataaattaaatgtataaattaaaagcctttaatttataattattgacTTATCAAACTGGGTTTTTGTGCCATCACAACTCCTTTTGGCTTTGTTTACAAACGACCGCCAAGAAGCGTAATGTAACGTTAGCCATTTGTCAATACACTACAAAAAATATggttctttaatttttttttgcgtaTAATAATTGATTTGTAGAACCGTATTGTCCCGAAGAAACCGTTTTATGTTAAATTAGTTCTTTATGTGAATTTAGGGAtctttatttttctaaattaaagTATGTAAACGTCTAAGTTAGGTGACAAAACACCTGCAGCTCATTAACTTTACTTGATTCTGGAGCTCGAGCATCAGCTACACACAGTCAACACTCTTTCAACAgTTTGTATGACCAGCTCTTTTCATCTGAGGATGCCTCTCTTCGGCTGGAATGTTCCAAGGGATCCAGGTTATCCTGATGTGGAGCGTGATCAGGTATAAGAGGAAGAGGATGACGGTGAGCACCCAGTAAAAGACTGACACAAACATTACCCAGCGCAGCGCAGGAACATGCAGCACCTTCATTTCTGAAACCCAACCATCTAAGAACAGTTTCTCCAAAATCCCCACAGACACATAGTCATGCATTCTCGTCCTCGCTCCCCGCGCTTCAGGTCACGTTGTCTGCGGCCTGCTCTCTTCACACCCCGGCATATGTTGCAGCAGAGGCTGGATCAGTGCCACATGCTAGCCTGCTGCCCGAGCTCCTCTCCCTGCTCTCCGCCACCTGTGTTCCCTCCCTCAGCGCCAGGCTCCAGGCTCTCTGGCTCCGACACACACCTGTGACTGGGAATGAGGCTCCAGCATAAACCTCTCCTCCACCTCCGAGCTGTCACTCATCCAACTCTTCCTCTGCACAAGTTTTGCAGAAAACCCCCATGGAAACACTACACAATCTCCTCAAATTAAGCACATCAACCCACTCCTGTCAACTGATAGGAAATTCAGAACAGTGGCAAAGTAGGACAGCAGTGATTTTCTTTTCATTAGAATGTTTTCCAACTCACCCACACGtcgttccaaacatgtttgaaatTCTTACTTCCACGGAAGacaaaaggagatgttttgaagaatgcccACACTGCCTTTTTATAGATACTgtatcattattaaaaataatagttctTGTGCAGTGATAAGAACCATTATAGTTCTTAAAAACAGTACACCAATATACATCATAATGAATCATTTAAGAagagttaaatatttatttttaagtttaaagcAGAAAAGTAGACTGCCATCTCGCTTTAATCCAGTTAATATTAAAGTACCTGATGTTTGAATAAAATGTTTCTTGAaggctttgattttttttttttttttttttttatcctgtgCATTTTGAATTATCCCTAGAGAAATGAGTGATTGAAATCGCAAATTCTGGGCAAAATTTCCTTACTATTGCTTGAGGTGGTTTTGGATTCATGCAAAAAAGGGTTCATGTGAATAAAGGAAGATGGAGATGCGTTTGCCGAATAAACTCAGATTCCATACAGCTTGTCTGGTTTACTGTTGTTTACCAGTTACCAatacagtcagcc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022091 False 1220 lncRNA 0.43 5 6291173 6351508
TCONS_00022090 False 1279 lncRNA 0.43 5 6291173 6351508
TCONS_00022093 False 1509 lncRNA 0.42 5 6291173 6351690
TCONS_00022092 True 1848 lncRNA 0.39 4 6291173 6351690

Neighbor

gene id symbol gene type direction distance location
XLOC_010418 NA coding downstream 41927 6248023 ~ 6249246 (-)
XLOC_010417 ctnnb1 coding downstream 85383 6182501 ~ 6205790 (-)
XLOC_010415 trak1a coding downstream 417307 5786770 ~ 5873866 (-)
XLOC_010416 BX957314.1 coding downstream 420484 5870573 ~ 5870689 (-)
XLOC_010414 NA coding downstream 505131 5746308 ~ 5786042 (-)
XLOC_010420 scgn coding upstream 4770 6356460 ~ 6377672 (-)
XLOC_010421 NA coding upstream 31840 6383530 ~ 6386642 (-)
XLOC_010422 ndufb9 coding upstream 35251 6386941 ~ 6391279 (-)
XLOC_010423 mboat1 coding upstream 43621 6395311 ~ 6424818 (-)
XLOC_010424 NA coding upstream 124326 6476016 ~ 6484227 (-)
XLOC_010626 CR392024.2 misc upstream 14543422 20895112 ~ 20895175 (-)
XLOC_010411 NA non-coding downstream 647435 5636286 ~ 5643738 (-)
XLOC_010409 NA non-coding downstream 702553 5453180 ~ 5588620 (-)
XLOC_010425 NA non-coding upstream 160656 6512346 ~ 6556501 (-)
XLOC_010426 NA non-coding upstream 236332 6588022 ~ 6591170 (-)
XLOC_010427 NA non-coding upstream 253695 6605385 ~ 6635296 (-)

Expression


Co-expression Network