Gene
RNA
| Item | Value |
|---|---|
| gene id | G270125 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 4046347 ~ 4051738 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU306547 | True | 1569 | lncRNA | 0.47 | 2 | 4046347 | 4051738 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000065_04027497_04039742 | PPP1R8B, PPP1R8 | coding | downstream | 6605 | 4026510 ~ 4039742 (-) |
| CI01000065_03944604_03949933 | NA | coding | downstream | 96160 | 3944581 ~ 3950187 (-) |
| CI01000065_03935077_03938904 | NA | coding | downstream | 107443 | 3935018 ~ 3938904 (-) |
| CI01000065_03845250_03848939 | NA | coding | downstream | 197406 | 3843527 ~ 3848941 (-) |
| CI01000065_03794501_03806693 | VEGFAA, VEGFA | coding | downstream | 239654 | 3793123 ~ 3806693 (-) |
| CI01000065_04070422_04072088 | NA | coding | upstream | 18466 | 4070204 ~ 4072088 (-) |
| CI01000065_04178828_04180116 | NA | coding | upstream | 126220 | 4177958 ~ 4180116 (-) |
| CI01000065_04318691_04330504 | NA | coding | upstream | 266697 | 4318435 ~ 4330782 (-) |
| CI01000065_04470763_04478735 | NA | coding | upstream | 418261 | 4469999 ~ 4479108 (-) |
| CI01000065_04484009_04501087 | TTK | coding | upstream | 432271 | 4484009 ~ 4501087 (-) |
| G270157 | NA | non-coding | downstream | 34215 | 4011918 ~ 4012132 (-) |
| G270154 | NA | non-coding | downstream | 38112 | 4007931 ~ 4008235 (-) |
| G269785 | NA | non-coding | downstream | 108430 | 3937688 ~ 3937917 (-) |
| G269780 | NA | non-coding | downstream | 112165 | 3933983 ~ 3934182 (-) |
| G269776 | NA | non-coding | downstream | 117640 | 3928484 ~ 3928707 (-) |
| G270195 | NA | non-coding | upstream | 85086 | 4136824 ~ 4137054 (-) |
| G270197 | NA | non-coding | upstream | 87095 | 4138833 ~ 4204783 (-) |
| G270218 | NA | non-coding | upstream | 143015 | 4194753 ~ 4198349 (-) |
| G270217 | NA | non-coding | upstream | 163330 | 4215068 ~ 4219014 (-) |
| G270213 | NA | non-coding | upstream | 170188 | 4221926 ~ 4222788 (-) |
| G269679 | NA | other | downstream | 272053 | 3773880 ~ 3774294 (-) |
| G269348 | NA | other | downstream | 733867 | 3304357 ~ 3312480 (-) |
| CI01000065_00782736_00793467 | NT5C3A, NT5C3 | other | downstream | 3262686 | 782697 ~ 793467 (-) |
| CI01000065_00622545_00624625 | NA | other | downstream | 3421690 | 622123 ~ 624657 (-) |
