XLOC_010420 (scgn)


Basic Information

Item Value
gene id XLOC_010420
gene name scgn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6356460 ~ 6377672 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020476
GGCCACATCTGCAGTTGCTCCCACCGAGCACAGATCACATTACTCTTTCTACATCactctgttttttctttttccatcATGGACAGTGCTTTTGCCAACCTAGATGCTGCCGGGTTTCTACAGATCTGGCAGCACTTTGATGCTGATgACAATGGCTACATTGAAGGGAAAGAGCTGGATGACTTTTTCCGTCACATGCTGAAGAAACTACAGCCAAAGGATAAGATAACAGATGAGAGAGTGCAGCAAATAAAGAAGAGTTTCATGTCTGCCTACGATGCCACATTCGACGGACGCTTGCAGATCGAGGaaCTGGCCAATATGATCCTGCCGCAGGAAGAGAACTTCCTTCTGATCTTTCGCAGAGAGGCTCCATTAGATAACAGTGTGGAGTTCATGAAGATCTGGAGGAAATATGATGCTGACAGCAGTGGTTACATCTCAGCTGCGGAGCTCAAGAATTTCTTAAAGGACCTGTTTCTGCAGCACAAAAAGAAGATTCCTCCTAATAAATTGGACGAGTACACGGATGCCATGATGAAGATTTTTGACAAAAACAAGGATGGCAGATTGGATCTTAATGACTTAGCGAGAATTCTGGCTCTACAAGAGAACTTCCTGTTGCAGTTCAAAATGGATGCCAGCAGTCAAGTGGAAAGAAAAAGAGACTTCGAGAAGATCTTTGCACACTACGATGTTAGTAGGACTGGAGCACTTGAAGGACCAGAGGTGGACGGCTTTGTCAAAGACATGATGGAACTAGTAAGGCCCTCTATCAGTGGAGGGGATCTGGATAAGTTCCGTGAATGTCTGCTAACTCACTGTGACATGAATAAAGACGGGAAGATTCAGAAGAGCGAGCTGGCCCTGTGTTTGGGACTGAAACATAAGCCGTAGTCCTCACATATACACTCAAGTTCTCCATTTTAGATTACTAGATTTAGAAATCTTTGTTGTGTGTATTGCTCATCTCTCAGTTTgcaaaatatattattgttaatttaatttaagtatatTTAATGCATTCAAAACTGTCAACTTTTGCAAGAATaagatatgtacagttgaagtctaaattattagcccctctgtatatttttcacccaagttctgtttaacagagattatttcaacacatttctaaacataatagttttaattacttatttctttgccatgatgacagtacatactattttactagatatttttcaagatactagtattcagcttaaagtgtcatttaaaggcctaactaggataattaggcaagttaggataattaggcaagtcggtaatgatggtttgttctgtagactatcaaaaaaaaaaaatattacttaaggggctaataataatattgaccttaaaaatgtttttatttattttttttttattaaaactgcttttattttagccgacaaagaagaaagaaaaaaatattatcagacatactgtgaaaacttccttgctctgataaacagcatttgggattttttttttaatcaaaggagagcgaataattttgacctcaactgtatgtgttAAAAATGTGAAGACTAATACAGTAGTGGTTTCTTCAATAAACGCTACATGTGTGAACTG

Function

symbol description
scgn Predicted to enable calcium ion binding activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein).

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:1900271 regulation of long-term synaptic potentiation biological_process
GO:0099509 regulation of presynaptic cytosolic calcium ion concentration biological_process
GO:0007420 brain development biological_process
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005829 cytosol cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041010-82 Predicted to enable calcium ion binding activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein).

Ensembl:

ensembl_id ENSDARG00000058732

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020476 True 1605 mRNA 0.38 11 6356460 6377672

Neighbor

gene id symbol gene type direction distance location
XLOC_010419 NA coding downstream 4770 6291173 ~ 6351690 (-)
XLOC_010418 NA coding downstream 107214 6248023 ~ 6249246 (-)
XLOC_010417 ctnnb1 coding downstream 150670 6182501 ~ 6205790 (-)
XLOC_010415 trak1a coding downstream 482594 5786770 ~ 5873866 (-)
XLOC_010416 BX957314.1 coding downstream 485771 5870573 ~ 5870689 (-)
XLOC_010421 NA coding upstream 5858 6383530 ~ 6386642 (-)
XLOC_010422 ndufb9 coding upstream 9269 6386941 ~ 6391279 (-)
XLOC_010423 mboat1 coding upstream 17639 6395311 ~ 6424818 (-)
XLOC_010424 NA coding upstream 98344 6476016 ~ 6484227 (-)
XLOC_010425 NA coding upstream 134674 6512346 ~ 6556501 (-)
XLOC_010626 CR392024.2 misc upstream 14517440 20895112 ~ 20895175 (-)
XLOC_010414 NA non-coding downstream 570418 5746308 ~ 5786042 (-)
XLOC_010411 NA non-coding downstream 712722 5636286 ~ 5643738 (-)
XLOC_010426 NA non-coding upstream 210350 6588022 ~ 6591170 (-)
XLOC_010427 NA non-coding upstream 227713 6605385 ~ 6635296 (-)

Expression


Co-expression Network