G270255


Basic Information

Item Value
gene id G270255
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4278998 ~ 4279380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU306684
AGTTGTGGCCTAATGGATAGAGAGTCGGACTTGTAACTCAAAGGTCATGGGTTTGAGTCTCAGGTCCGGCAGGGATTGTTGGTGAGGGGAGTGAATATCCAGCGCTCTCTCCACCCTCAATACCACGACTGAGGTGAGACCCTTGAGCAAGGCACCGTACCCCCAACTGCTTCCCGGGCACCGCAGCAATGGCTGCCCACTGCTCTGGGTGTGTGTTCACGGTGTGTGTGTGTGTGTTCACTGCTGTGTGTGTACACTTGGATGGGTTAAATGCAGAGCACAAATTCCTAGTATGGGTCACCATACTTGGCCACATGTCACTTCACTTCACTTATTGTTTAGTTTGTAGCTGATGCTCAAGTGGTATCTTGGTAAATTGGTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU306684 True 383 lncRNA 0.51 1 4278998 4279380

Neighbor

gene id symbol gene type direction distance location
CI01000065_04178828_04180116 NA coding downstream 98882 4177958 ~ 4180116 (-)
CI01000065_04070422_04072088 NA coding downstream 206910 4070204 ~ 4072088 (-)
CI01000065_04027497_04039742 PPP1R8B, PPP1R8 coding downstream 239256 4026510 ~ 4039742 (-)
CI01000065_03944604_03949933 NA coding downstream 328811 3944581 ~ 3950187 (-)
CI01000065_03935077_03938904 NA coding downstream 340094 3935018 ~ 3938904 (-)
CI01000065_04318691_04330504 NA coding upstream 39055 4318435 ~ 4330782 (-)
CI01000065_04470763_04478735 NA coding upstream 190619 4469999 ~ 4479108 (-)
CI01000065_04484009_04501087 TTK coding upstream 204629 4484009 ~ 4501087 (-)
CI01000065_04507862_04513517 DCTN3 coding upstream 228482 4507862 ~ 4513517 (-)
CI01000065_04657955_04662886 NA coding upstream 378229 4657609 ~ 4663107 (-)
G270229 NA non-coding downstream 47378 4231366 ~ 4231620 (-)
G270228 NA non-coding downstream 48588 4230124 ~ 4230410 (-)
G270213 NA non-coding downstream 56210 4221926 ~ 4222788 (-)
G270217 NA non-coding downstream 59984 4215068 ~ 4219014 (-)
G270197 NA non-coding downstream 74215 4138833 ~ 4204783 (-)
G270268 NA non-coding upstream 19602 4298982 ~ 4314037 (-)
G270287 NA non-coding upstream 56477 4335857 ~ 4336183 (-)
G270288 NA non-coding upstream 56827 4336207 ~ 4336464 (-)
G270240 NA non-coding upstream 91428 4370808 ~ 4371142 (-)
G270242 NA non-coding upstream 93384 4372764 ~ 4373214 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other downstream 468755 3793123 ~ 3806693 (-)
G269679 NA other downstream 504704 3773880 ~ 3774294 (-)
G269348 NA other downstream 966518 3304357 ~ 3312480 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 3495337 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 3654341 622123 ~ 624657 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G70695 NA non-coding NC_047598.1 CM018544.1 25556837 ~ 25557761 (+)