XLOC_010421


Basic Information

Item Value
gene id XLOC_010421
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6383530 ~ 6386642 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022094
gttcattctgctgtggcgacccctgatgaacaaacggtctaagccaaagAATCAATCGAGTTGCTACGCTTGGCTTTTGTTGAAGACTCCAGCATAAAACAGTGTCTGATTTTTTTCATCAGTCAGGAGGACATCATCTCACTTTCAGcaaaacactggctatttggAGTTAACAGTGCACAGTTAAATAACTGCCACAGTAAAGACATctaactatctaagcccaccaccacccccttcctcatGGAAGGacatccatcattcattcattcatccattcaggaAATTCCTAACCAGACCATCAGTTTCCAATCATTGCTGAGGTCTGTGATTCCTATTTGTctccacatgctgcactccagtctgcaaaagacaaagacagaaCTAACAGAGCTGCACATGCTTGCTGAGATCTAGCAGTGCACAAGATGTCCTCTAGTGTTCTTCAGAtgaatctccactgatgctcttgtgagtttcctCCTTCTACATATTGTGTGTCTATTGCTTGAATATAAAAAATCTGCCACAGGCATCAATCTAactaagcccaccaccacccccttcctcatggaaggacatctatttatCTCTCATTTATCCACCTATTCATTTTGGAAATACCTAACCAGACCATCAGTttgcagtcattgctgaggtgtgattcccatttctccacatgccccagtctgatctgcaaaagacaaaaacaatactAACAATGCTCACAGGCAATACATCTAGctaactatctaagcccacctccacccccttcctcttggaaggacatctgttGTCGATAGGAGATACCTGACCATTAGTCCATTATCTGACCATtatcattgctgaggtgtgtgactctgtaaaagacaaagacaacaTCAATAGAGTTCTACCTGCTTGTtcaattccat

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0061061 muscle structure development biological_process
GO:0042383 sarcolemma cellular_component
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005901 caveola cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022094 True 914 lncRNA 0.43 3 6383530 6386642

Neighbor

gene id symbol gene type direction distance location
XLOC_010420 scgn coding downstream 5858 6356460 ~ 6377672 (-)
XLOC_010419 NA coding downstream 31840 6291173 ~ 6351690 (-)
XLOC_010418 NA coding downstream 134284 6248023 ~ 6249246 (-)
XLOC_010417 ctnnb1 coding downstream 177740 6182501 ~ 6205790 (-)
XLOC_010415 trak1a coding downstream 509664 5786770 ~ 5873866 (-)
XLOC_010422 ndufb9 coding upstream 299 6386941 ~ 6391279 (-)
XLOC_010423 mboat1 coding upstream 8669 6395311 ~ 6424818 (-)
XLOC_010424 NA coding upstream 89374 6476016 ~ 6484227 (-)
XLOC_010425 NA coding upstream 125704 6512346 ~ 6556501 (-)
XLOC_010426 NA coding upstream 201380 6588022 ~ 6591170 (-)
XLOC_010626 CR392024.2 misc upstream 14508470 20895112 ~ 20895175 (-)
XLOC_010416 BX957314.1 non-coding downstream 512841 5870573 ~ 5870689 (-)
XLOC_010414 NA non-coding downstream 597488 5746308 ~ 5786042 (-)
XLOC_010411 NA non-coding downstream 739792 5636286 ~ 5643738 (-)
XLOC_010427 NA non-coding upstream 218743 6605385 ~ 6635296 (-)
XLOC_010428 NA non-coding upstream 261388 6648030 ~ 6651719 (-)

Expression


Co-expression Network