G270090


Basic Information

Item Value
gene id G270090
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4710009 ~ 4714110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU306507
GTAATTTTGCTTCCCAAGTAAATGTATCTTATTTTTCTGGAAAACAAGACAAAAATACTGATATTGATTGATTGATTGATTTTTTGGACAGTGTAATCTTAATGTTTTACTACTTCATGGTTCGTGAATTATAAGACACCAACCATGAAAAAAATATTTTCCCCCTATTTTTTAATGCAATACTGTGAGCAAACAGGATTAGATTAGAAGATATTTTACATAACGATATGTGATACTAGAAGATCTCATTATGTAAAAGGAGCCTTTAAATATGAATCATTCTGAAGGTCTTTTATTAGGTTTATGACTTTCCTTGCAATCTGCTTACAGTCTTTCTTTTTATTGGCAGTAGTTTGTGTCTCACAGCAGGCGTTTGGTTTAGGAATATCAGACTTAAAGTTGTCTCTCTTGACCAAGGCCATTGTGTCAGTATTTACATAGATGGCATATATTTAGCAGTATAAAGATGTTTATTGGGACCTGTTATCCTGACACCTCAGTCCTGCACCTGATTGGCTTATACAGTATGTCATCAGCAAACAGAGACAATGCATTTGTCACTATAGGTATACATATCACTGCATCAAATATCAGTGAATACATTTTAATTTTATAGGTAAAAGATAGTGAATTCTCTTGTTTTCCTCACACACTCCAAACATTATAGGTGGGCAGGGGCGTTGGTTTAAACATTAGCGCTGTAACATTATACATGTGAGAAGATAGAAGGCAAAGAAGGGTGGTCAAAGGGCAAAGGTCTTTTGACGACCCTGTACCGGTGGTCATAATTATCCACACCATCACCTGCAGTAAGACTCTTCAAACACTAAAGAGGAAGTCTTGCATTAGAGGTCAAGGTTTACTGCCTCCACCCATGATAGTCACCATGGTGATATTATTTCATAATATGCTCATCATACTCCGCCCAGCAGAAGCAGAAGTCTAGTGGGCGCGTCTGTTCAGGTCTGAATCAGCTGTTCCCTCAATGCAAAACAATAGCTGGGTGTGTGAGTTGTGCTATTGCTCAACAAACATCCTTCACTCCTATATTGTATTAAGCATTCAACTGTCCTTCTGTACAAAATTGCTCGAATTATTGAATGAGAATCAATGGAGAACACTGGAGAGTAATTAAGTGTGTAGACTTAAGTGTTACGCTTTGACTGAATGTCATGTATTCAGGGATGCAAGCCACTCCAGTTTGGCTTTTGCTTTGTTTTAGGTCACGCATTTCTCAGGATTGTTTGATACGTGACTCCTACAGTGTCTATATCTTTTTAACTGTCACTGTCAGCTGGACACTTGGCACACATTTTTTATCACATATTTTAGTAATCATCATACATTAGGTATCATTCAAAAGCTTAAACATTCACAATCCTGTCGTCCTGTTTTGAAATTGGACATTGCACTCCCATAGAAACGGCTCAAAGTTTCTGATATCAACTTCAAATTCGGAACACAACTTGGTTAGACATATGGCTTGGATTTTCTAGCAATTTTAGAATGTATAAAACAAAAATGTTTAGCTCATTACATTTGCTTTACACTGCTGAGTATCTTCTTTAAAAAGAGACCAACCTGAGGTCTCTATTTCAAAGCATTCATGAATTACAACTATTTAAGTTCAGATCTATGCTCAAAAAGGGGGATGACCCCTAATGGTGAACGCACAACATCAACATCTTTGTTGATCCTGGAACAACATTTTAATCAACCAATCTGATTTGAGGGACAAGTTTACAGTTTATGTCAAGTTTAGGCTTACAACCAGGGTTACGTGCTTCTACATCAGTGTTATTCACCTATCATTTCCCTCTGATTTTTAGGGATAGGTTATGGGTAGGTTTAGGTTTAGGGGTGGGGATAGGGTTAGGACTACATTTTCAGATGGGAATGTTGTTCCAGGATCAACAAAATATGTTGACCCAGGAACACAGATGCTTTCGCACCAGGGAACTTTTTCATAGTTCCTAGAACTATTTGCGGAAGTATCCTGATTTTGCCGTGTTTGCACTGCAGGAGCTAGCAATGATTTTAGTTCTAGGAACTCATTTGGAGGGAACTAGTTGATTGGCCGAACACACGCGAAACACCGGCACCCGCCATTTTTAAAAAAGCGTGTACACACGCAGTTTATAGCCTATATATTTACTCCACAAAATAACTCTATGAACATGGAAAACAATGATAGATGGACCTCTCAAGTTAAGGAGAGAATCCAACGCAACTTTGAGGGGACCAAGCGAAACATGATTATGTATTTCTGCTCAGCTAGTGACACTGGACATGAACCACACGGCAAACGCTAATACTTTTTCATACACTGTCTTCTTTTTTTGTATAACAGTTCTACCTAATAACATATTAGACTGGCTGTTAAATAAATTGTAAACTAATGAAGATGGAGAACGGGAGAGCTGTGTGCTCAGGCTCTGTCTGGCATTCTCAGCAACGTCAAAATAAATATCCGCCGCGCCATCAAAATAAAAGTCACAACAACAAGCGCAACTTACGTCAATTCATAGTTTCTACTGCCGTTGTGAATGCAACTAGGAAAACGGCCCTAGGGGAACTATTAGTTCTCGGGGAACCACCCTGATGGCTAGTTCCGGTGTGAAAGCCCCTAATGTCTTGCAAAATCACAGTGACCGATCACTAACAGGTTAAAGGCTTATCAGTCCTTGCATTCTCAAAGCATGATCCGTCATCACCATCCTTCGTAATATGGATGGTGCTGGGATGTGCTGTGCACCTCATGAGACCTGATGCCCATCGCATCAGATTTAGTCTCTTCAGGCCATAGAGCGTTCTTCTTAATCCTACATGCAATCAGAGAAACTGTAGCTGAGATGATTTGAGTTTACAGCAGTTTTCTTCTTGCACTTGCTCCCAGAAATAAGTGTATCGAAAGACTTTATCAAAGACCACCAGCAAATAATTGTTTTTCATTCTTATACATGTCATTTTGTGTATTTTTTTACAGTATCATTACGGTCATACTTTATATTTGGTGGCCTTAACTACTACCTATTAACATGTAATACCTACAAGACTATGGATTTACTGTGCAACTACATGATGTTTCCACATTTACTGCTAATGAGTTTGAGGTATAGTTAGGTTTAGAAGTAAAGGTAGGGTTAGGATTATAGGGGTTTAAGGCGAGGGTGTCCAAACTCAGTCCTGGAGGGCCACTAACCTGCAGAGTTTAGCTCCAACTTGCCTGAACACACCTCTCTGGAAGTTTCTAGTATCCCTAGTAAGACCTTGATTATCTGGTTCAGGTGTGTTTAATTGGATTTGGAGCTAAACTTTGCAGGACAGTGGCCCTCCAGGAGTAGGATTGGACACCCCTGTTTTAATAACTAGGTAGTATAGTAACCGTCAACCTACCCCTAAACCTAACCTTAAACTTATAGTACCAGTACTTTCTTAGGTAAGTAATGTAAGTACATGTACATACTCTAAAATAAAGTATGACCATTTTATGAAATGTTTTAGCAGTTAAGGCCACCTGATGTAACTTTACTAACTCACTAGCAGTAAATGTGAGCATTTCAAAGTACTGCAATGTTCTCCAGTACTGATGACTAATGCAAGTGTTGGTAAGTTGCATGAGACAGCAGTGTGGATCATGTTCTCTTGTGTTTGATGCTGCTGAGGGAACATGATTCTGCAGGCTGTAGGTGTGGCTGTGGTGTTTTTGGTGACGCACAGTTAAGATTAAAGCTACTCTGCCTTCATGGTCAAATTTCCTAGCCCGAGGCCTCAAAATACATCACATTTTCTTCTCCCCAAACCTGTGCTCTGTCTTTGCTTGACAATGGAGCTGTCTAGACACCTCCTGCAGTCATTACTCCCCAGCTTTACCCAGAGATTGGGTGTGCCTGAGGGCTGCTGTGTTGGAATAGTTTGGTAGGAGATGTGAGGCGTTCCTACACAAAGAACTGATTTGAAATCATTCTGATATTGAGCTTTCATCTGTTCCACTTCTCTCTTCACGCGCAGTTCAACTGTTTCTTTATTAACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306507 True 4035 lncRNA 0.40 2 4710009 4714110

Neighbor

gene id symbol gene type direction distance location
CI01000065_04684547_04687726 NA coding upstream 22283 4683420 ~ 4687726 (+)
CI01000065_04672707_04680741 NA coding upstream 28427 4672639 ~ 4681582 (+)
CI01000065_04578385_04586426 ECHDC1 coding upstream 123555 4577840 ~ 4586454 (+)
CI01000065_04561164_04574594 NA coding upstream 135353 4561118 ~ 4574656 (+)
CI01000065_04547859_04555579 SOGA3 coding upstream 154430 4547859 ~ 4555579 (+)
CI01000065_04723206_04763909 NA coding downstream 9096 4723206 ~ 4763975 (+)
CI01000065_04775143_04786346 NA coding downstream 57027 4771137 ~ 4786876 (+)
CI01000065_04790849_04819273 MACF1B coding downstream 75469 4789579 ~ 4819537 (+)
CI01000065_04844180_04849353 NA coding downstream 130070 4844180 ~ 4849831 (+)
CI01000065_04851961_04862931 CYTH1, CYTH2 coding downstream 137851 4851961 ~ 4863003 (+)
G270001 NA non-coding upstream 183795 4515754 ~ 4526214 (+)
G270062 NA non-coding upstream 197401 4502213 ~ 4512608 (+)
G269999 NA non-coding upstream 204890 4500293 ~ 4505119 (+)
G269967 NA non-coding upstream 330507 4376057 ~ 4379502 (+)
G269966 NA non-coding upstream 338815 4370806 ~ 4371194 (+)
G270054 NA non-coding downstream 68759 4782869 ~ 4784552 (+)
G270098 NA non-coding downstream 110677 4824787 ~ 4825329 (+)
G270100 NA non-coding downstream 114550 4828660 ~ 4828880 (+)
G270036 NA non-coding downstream 154362 4868472 ~ 4870254 (+)
G270110 NA non-coding downstream 173064 4887174 ~ 4887388 (+)
G269225 NA other upstream 1156885 3552804 ~ 3553214 (+)
G269181 NA other upstream 1247081 3458957 ~ 3462928 (+)
G268805 NA other upstream 2071804 2608907 ~ 2638205 (+)
G268525 NA other upstream 2470011 2239159 ~ 2239998 (+)
G267577 NA other upstream 3627354 1082153 ~ 1082655 (+)

Expression


Co-expression Network