XLOC_010424


Basic Information

Item Value
gene id XLOC_010424
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6476016 ~ 6484227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022095
CACACATTCATCACATCTCTATAAATTTAACTCCGATCCAATCAGATCCATGCTGCATGTAGACCATATGGCGGTCCTGCATCTAGGAAGGACCTTTCACAGTCATCTAAACCTTGACAACACAAGCCCTCCAGACAGAGTATCAATAAAGACGCCGGAGCCCTCAGCACAGATCCCTCTGACAAGCTTGAATATGTCATGTGAGGACCAGCTGGGACTAAACACAATCATGAACACCGTTTGTTCATGATTGATTCATTTTGCAACATGGACAATGTTACTGAATCAACACTGTATTGATTGGAATTGAAAAATGACATGGCTGTGTTCAGTAGAGCTGCTTACCGATGACATGAGCATTTCATAATGAATGACCTTTGCACCGTTATTGAATACCTCTTTCTATCATAATGGTTATGTTATGGAGCCAGTGTCAAGTGAACTGGAGCCTGTCATGAGCTGGCCGTGGAATTTCCCATACTTAACCTCACTTCAACcggtataaaaacaaatattgtgcatgttcttCAGGCAATATGGTTATActtatttcaaattttttttatttaataaaattttgttattattca
>TCONS_00022097
CGTGCTGTGGCTGAGCGCTTCTTGAAATACAGACCAGTTGTTTGTTAGAGCTTTAAAGATGTAATTTAACTAAACTAGCTCCTGTGTGGTGAAGCTATTGGAGTCAGACTTCTACTTTCAATGATCTTCTTGTTAACATCTAATAATTCACCCAAAGAGAActgaccacttacctccatatggaccgCTATCACGCTGTTACCAGAATGTCGAGTATGTATGTGCcatgtatgttggtggacttgagatgtaGAGAAGAGTTGACCACACCGATGAGGTTTGAATCTGGCAAAGAACAGttgcagaaagcagTTAACTCCGATCCAATCAGATCCATGCTGCATGTAGACCATATGGCGGTCCTGCATCTAGGAAGGACCTTTCACAGTCATCTAAACCTTGACAACACAAGCCCTCCAGACAGAGTATCAATAAAGACGCCGGAGCCCTCAGCACAGATCCCTCTGACAAGCTTGAATATGTCATGTGAGGACCAGCTGGGACTAAACACAATCATGAACACCGTTTGTTCATGATTGATTCATTTTGCAACATGGACAATGTTACTGAATCAACACTGTATTGATTGGAATTGAAAAATGACATGGCTGTGTTCAGTAGAGCTGCTTACCGATGACATGAGCATTTCATAATGAATGACCTTTGCACCGTTATTGAATACCTCTTTCTATCATAATGGTTATGTTATGGAGCCAGTGTCAAGTGAACTGGAGCCTGTCATGAGCTGGCCGTGGAATTTCCCATACTTAACCTCACTTCAACcggtataaaaacaaatattgtgcatgttcttCAGGCAATATGGTTATActtatttcaaattttttttatttaataaaattttgttattattca
>TCONS_00022096
CGTGCTGTGGCTGAGCGCTTCTTGAAATACAGACCAGTTGTTTGTTAGAGCTTTAAAGATGTAATTTAACTAAACTAGCTCCTGTGTGGTGAAGCTATTGGAGTCAGACTTCTACTTTCAATGATCTTCTTGTTAACATCTAATAATTCACCCAAAGAGAActgaccacttacctccatatggaccgCTATCACGCTGTTACCAGAATGTCGAGTATGTATGTGCcatgtatgttggtggacttgagatgtaGAGAAGAGTTGACCACACCGATGAGGTTTGAATCTGGCAAAGAACAGttgcagaaagcagATCCATGCTGCATGTAGACCATATGGCGGTCCTGCATCTAGGAAGGACCTTTCACAGTCATCTAAACCTTGACAACACAAGCCCTCCAGACAGAGTATCAATAAAGACGCCGGAGCCCTCAGCACAGATCCCTCTGACAAGCTTGAATATGTCATGTGAGGACCAGCTGGGACTAAACACAATCATGAACACCGTTTGTTCATGATTGATTCATTTTGCAACATGGACAATGTTACTGAATCAACACTGTATTGATTGGAATTGAAAAATGACATGGCTGTGTTCAGTAGAGCTGCTTACCGATGACATGAGCATTTCATAATGAATGACCTTTGCACCGTTATTGAATACCTCTTTCTATCATAATGGTTATGTTATGGAGCCAGTGTCAAGTGAACTGGAGCCTGTCATGAGCTGGCCGTGGAATTTCCCATACTTAACCTCACTTCAACcggtataaaaacaaatattgtgcatgttcttCAGGCAATATGGTTATActtatttcaaattttttttatttaataaaattttgttattattca

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022095 False 590 lncRNA 0.39 2 6476016 6476727
TCONS_00022097 False 876 lncRNA 0.40 3 6476016 6484227
TCONS_00022096 True 857 lncRNA 0.40 3 6476016 6484227

Neighbor

gene id symbol gene type direction distance location
XLOC_010423 mboat1 coding downstream 51198 6395311 ~ 6424818 (-)
XLOC_010422 ndufb9 coding downstream 84737 6386941 ~ 6391279 (-)
XLOC_010421 NA coding downstream 89374 6383530 ~ 6386642 (-)
XLOC_010420 scgn coding downstream 98344 6356460 ~ 6377672 (-)
XLOC_010419 NA coding downstream 124326 6291173 ~ 6351690 (-)
XLOC_010425 NA coding upstream 28119 6512346 ~ 6556501 (-)
XLOC_010426 NA coding upstream 103795 6588022 ~ 6591170 (-)
XLOC_010427 NA coding upstream 121158 6605385 ~ 6635296 (-)
XLOC_010428 NA coding upstream 163803 6648030 ~ 6651719 (-)
XLOC_010429 mbpb coding upstream 319243 6803470 ~ 6849781 (-)
XLOC_010626 CR392024.2 misc upstream 14410885 20895112 ~ 20895175 (-)
XLOC_010418 NA non-coding downstream 226770 6248023 ~ 6249246 (-)
XLOC_010416 BX957314.1 non-coding downstream 605327 5870573 ~ 5870689 (-)
XLOC_010414 NA non-coding downstream 689974 5746308 ~ 5786042 (-)
XLOC_010430 AL845419.1 non-coding upstream 344325 6828552 ~ 6829635 (-)

Expression


Co-expression Network