CI01000066_00019553_00029834 (PAHX, PHYH)


Basic Information

Item Value
gene id CI01000066_00019553_00029834
gene name PAHX, PHYH
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 19447 ~ 30531 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_00019553_00029834.mRNA
CTATAAAAGAAGTGCGGTTCACTGTAGAAATAACAGATTAGAATCTGAATTACAGATAAGAGCTGAAGACAAGTGCACTACAACATCCAAGAAAGATGAAGACTGCGACCCTTTTGTGCCTCTGTTTCTTAACTTTCAGTTACAGTTTGGCAGCCAGCTCTGTGGAGGATGTGTACGAATATCTGTGGGAGAAGAATAAAGACATCGCCAGTGCGACACTCGGGACTGACTTCTTGATACAAATGCAGAACGGCAGCCTGCAAGCGGAGCGGTACGTCAATTTCACCATCCAGGACATCGGCTATCTACTGAAAGTGACCAAGATGTTGAAGAGAATGAGTGTAAAAGTAACTCAGCCCAATGACCTCAGGGACTTCATGAAAGGCAGATACTCAAGCTACAAAAGCTTTGCGGACTCAATGATCAAACAATATTTTTTCAAGAAACCTGCTGGAAAAAGAAGATCCGCTGTACTTTGCTGTGGGTCTCCTGCCCTGCTCCAGACTCTGGGTACACACTTGGTAACTGTCCCAGTAACAGTTTGGAAATTAAATCTGTGGAGGATTGCTTATGAGACAATCCGGGGAGACTTCCTGATAAAAATGCAGAACGGCAGCCTGCAGGCGGAGCGATACGTCAACTTCACCTTACAGGACATCAACTACGTACTGAACATGATGGAAATGCTGAAGGAAATGAGTGTAAAAGTAACTCAACCCGATGACCTCAGGGACTTCATGAAAGGCAGATGCTCAAGCTACAAACGTTTTGCAGACATACGGCTTAATCAATATTTTTTTAAGAGTGCTCCTCCCATCCAGCCAACTCCAGCTATGAGGACGTATCTGTCGTTCTACAGAAGCCTCCTGGAAAAAGAAGATCCGCTGTACTTTGCTGTGGGTCTCCTGCCCTGCTCCAGACTCTGGGTGTGGCTGGGTGATAATCTCAGAACACCCCCAACCAATGCCTATTACACTTGGAAGGTGGAGAATATGGGCGGCCATCCTGAGAAATACAGAGCTCTGCTGAACAAGAAAGAGTTTGAGCGCATCTGTAAGAGAGAGGTGAAGGTTCCTGGCTTGTTGATAATGAAAGATGTATCCATTGCTAAATCCGAGTTTGTTGAAGGTGAGAAGGCTGTGACCAAACTTCAGGACTACCAGGAAGATCCAGAACTTTTCCGCTACTGCACTTTACCCCAGATCCTGAAGTATGTGGAGTGTTTCACCGGACCCAACATCATGGCCATGCACACCATGCTCATCAACAAACCACCGGACACAGGTAAGATGACCTCTCGCCATCCCATGCACCAGGATCTACACTACTTCCCCTTCCGACCTGCAGATCGCATTGTGTGTTCATGGACCGCCATGGAGAAAGTGCACCGGCAAAATGGCTGCCTGGTTGTCCTGCCCGGCTCACACCATGGCACTCTACAGGAACATGACTACCCAGAATGGGAGGGTGGAATAAATAAGATGTACCACGGGGTGCGTAACTACGACCCAGACCACCCCAGAGTGCATTTAGAGATGGAGAAAGGAGATACAGTGTTTTTCCATCCTTTGCTCATCCACGGCTCAGGAATGAACCAAACCAAGGGATTTCGAAAGGCCATTTCCTGTCACTACGCCAGCTCTGACTGCTATTATATTGATGTGAAAGGAACAACTCAGGAGAACATCAGCAATGAAGTGAAGGAGCTTGTAGCCAAGAAGTATGGAGTTGACGATACAATCTCCTTTCAGGTGTGTTTCCAGCTACAAATGCAAAGTTTCGTTCATGTACATGTGGCTTATCTTTGCAGTCGGGTTCAACATGCATGTTTTTGTTCTATACGCAGGACACTTGGGCTTTGCGGGGACGTCTGGTCCAAGGAGAAAGAACATCAATGTGACTTGCCAGATCTGTTTGACTTAGAGAGGACGGCTTCACAACTGGATTAATTAACAGCACACAGCTGTTTGTTAATTTGACAATTTCCTTAAAACTGATAATAATGCTTTAAGTACGGTTTTCACCATCAGGTGGCACTGTAGGGAGTAAATCATGGATCACACACACTGAATTGCCATCTGTGCCTGGGACGATCAGTCCTGATACCGATCAAATAATAATGAAAGCCAGACATTGTAATATTAGCATCAACGGATCTTGGTGTGGCTTTTTCTTTAAGCAATGTAAGAACATTGGGAATTCATTGTCTTGGATTAATACGTCAGCTGTTTGTGAGAGTGTTTCCTGCAAGTAATTATTAGTGAGGTTGTTGCTTATTAGTAGTACTTTGATCAGAATTCGAATTCACAGCGGGTACTTGGGAAGGTATAATTGAGTACAGCAGTTTGTTTAATCCGCCTTCATTTGAAATGTCTAAGATCCAGCTTTTTGCTGATGGAAATCAGAGACAAAGCAAATATTTTTACTATTCTGAAATATCAAAGGGATTAATATGTTTGATCAACATTAGATCAGGTCTAAACATACCTATATAACTTTAACACTACAGTGATAGTAACTTTTCCTTGATAATAACAGCTTTTAGACTTGTGATCTAACTGAGAAAAAGTTTCTACCATATAATTGTTTAATTTAAATAAAATGAATGTTTATTTTTAATAATGTGAATGACAATGTTTTACTACA
>TU306975
ATAAACTGCCACTATAAAAGAAGTGCGGTTCACTGTAGAAATAACAGATTAGAATCTGAATTACAGATAAGAGCTGAAGACAAGTGCACTACAACATCCAAGAAAGATGAAGACTGCGACCCTTTTGTGCCTCTGTTTCTTAACTTTCAGTTACAGTTTGGCAGCCAGCTCTGTGGAGGATGTGTACGAATATCTGTGGGAGAAGAATAAAGACATCGCCAGTGCGACACTCGGGACTGACTTCTTGATACAAATGCAGAACGGCAGCCTGCAAGCGGAGCGGTACGTCAATTTCACCATCCAGGACATCGGCTATCTACTGAAAGTGACCAAGATGTTGAAGAGAATGAGTGTAAAAGTAACTCAGCCCAATGACCTCAGGGACTTCATGAAAGGCAGATACTCAAGCTACAAAAGCTTTGCGGACTCAATGATCAAACAATATTTTTTCAAGGGTGAGCCTCTCATCCAGCAAACTCCAGCCATGAGGAAGTATCTGTCGTTCTACAGAAACCTGCTGGAAAAAGAAGATCCGCTGTACTTTGCTGTGGGTCTCCTGCCCTGCTCCAGACTCTGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Function

symbol description
phyh Predicted to enable phytanoyl-CoA dioxygenase activity. Predicted to be involved in fatty acid alpha-oxidation. Is expressed in intestinal bulb and liver. Human ortholog(s) of this gene implicated in Refsum disease; Zellweger syndrome; orofacial cleft; and peroxisomal disease. Orthologous to human PHYH (phytanoyl-CoA 2-hydroxylase).

GO:

id name namespace
GO:0048244 phytanoyl-CoA dioxygenase activity molecular_function

KEGG:

id description
K00477 PHYH; phytanoyl-CoA hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_00019553_00029834.mRNA False 2646 mRNA 0.43 10 19458 30531
TU306975 True 629 TUCP 0.41 3 19447 20273

Neighbor

gene id symbol gene type direction distance location
CI01000066_00002211_00003080 NA coding upstream 16124 2123 ~ 3334 (+)
CI01000066_00043800_00047188 UCMAA, UCMA coding downstream 12961 43492 ~ 47755 (+)
CI01000066_00063935_00066860 CDC123 coding downstream 33404 63935 ~ 67193 (+)
CI01000066_00109609_00131845 CAMK1D.L, CAMK1D, CAMK1DA coding downstream 79078 109609 ~ 132179 (+)
CI01000066_00151325_00157474 OPTN coding downstream 120705 151236 ~ 158144 (+)
CI01000066_00273310_00276428 NA coding downstream 242626 273157 ~ 276498 (+)
G270531 NA non-coding downstream 17921 48452 ~ 57697 (+)
G270525 NA non-coding downstream 32691 63222 ~ 180177 (+)
G270545 NA non-coding downstream 153665 184196 ~ 184427 (+)
G270546 NA non-coding downstream 155678 184528 ~ 186677 (+)
G270547 NA non-coding downstream 164155 194686 ~ 196431 (+)
G270973 NA other downstream 1813921 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 2238638 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 2271679 2296071 ~ 2305637 (+)

Expression


Co-expression Network