XLOC_010425


Basic Information

Item Value
gene id XLOC_010425
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6512346 ~ 6556501 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022098
TCTAGGTATTGAGTCCTCAACCTGCTTAAAAGGAGGTAGAGAAGAAGCAGTGGACAGGAAGTAGTGTGCTCAGCACGTGGAATGGCTTCTTCACTTCGCTGTGCTTTGTTGGGGCTctcatttgagaaacatttttgttCTTATACTCAGATTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAATTTTGGAGTGGTCCAATCCATGGAGTACACCAGAACATCAACAGACCAATTTGTGGTGCTAGCTGTGGACTCCACATCCCATCTTCAAGGTCATCAATCTGGAGACGATGCAGCTTTGGACGGACGATTTTTTCCATCATGTCTACCCTGTCTTTCATGTTTCACAAATTAAACCTGTCTTGTGTTCTCCCCCACTATTCCCTCACAAGAAGAAATGAGGAAGCAAACATACAATCCACTATTGACAGACTGATGTTATCTAATAAACAAAGGctcccatatttattttttagacccAGTGTCCATCAGTCCGAGGAAATAGTGTGCTGCTACTTTATAATAAACTATATGATGTATTATAATCTAGGACatgatgttttttttcagtaCTGTGGAGCACTATGATAGTAATAGTACCTGCTTTAAAGTGCATCTGCTTTAAAATCTGTCTATACCATCTTCTTGAGAAAAATAGAAAAGACAAGATAATATGATAA
>TCONS_00020480
TCTAGGTATTGAGTCCTCAACCTGCTTAAAAGGAGGTAGAGAAGAAGCAGTGGACAGGAAGTAGTGTGCTCAGCACGTGGAATGGCTTCTTCACTTCGCTGTGCTTTGTTGGGGCTctcatttgagaaacatttttgttCTTATACTCAGATTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAAGTAAGACCAAAGACCAAAGGGAGTGGGAGATTGAACAAGAAGTCTGGAGACTTTAAGTTGGATAGAACTGGCAGGGCGATGTTGCTGGCTCATACACCTGGTCAGACAAAATATCAAGTTTTGGAGTGGTCCAATCCATGGAGTACACCAGAACATCAACAGACCAATTTGTGGTGCTAGCTGTGGACTCCACATCCCATCTTCAAGGTCATCAATCTGGAGACGATGCAGCTTTGGACGGACGATTTTTTCCATCATGTCTACCCTGTCTTTCATGTTTCACAAATTAAACCTGTCTTGTGTTCTCCCCCACTATTCCCTCACAAGAAGAAATGAGGAAGCAAACATACAATCCACTATTGACAGACTGATGTTATCTAATAAACAAAGGctcccatatttattttttagacccAGTGTCCATCAGTCCGAGGAAATAGTGTGCTGCTACTTTATAATAAACTATATGATGTATTATAATCTAGGACatgatgttttttttcagtaCTGTGGAGCACTATGATAGTAATAGTACCTGCTTTAAAGTGCATCTGCTTTAAAATCTGTCTATACCATCTTCTTGAGAAAAATAGAAAAGACAAGATAATATGATAA
>TCONS_00021782
AGTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAAGTAAGACCAAAGACCAAAGGGAGTGGGAGATTGAACAAGAAGTCTGGAGACTTTAAGTTGGATAGAACTGGCAGGGCGATGTTGCTGGCTCATACACCTGGTCAGACAAAATATCAAGTTTTGGAGTGGTCCAATCCATGGAGTACACCAGAACATCAACAGACCAATTTGTGGTGCTAGCTGTGGACTCCACATCCCATCTTCAAGGTCATCAATCTGGAGACGATGCAGCTTTGGACGGACGATTTTTTCCATCATGTCTACCCTGTCTTTCATGTTTCACAAATTAAACCTGTCTTGTGTTCTCCCCCACTATTCCCTCACAAGAAGAAATGAGGAAGCAAACATACAATCCACTATTGACAGACTGATGTTATCTAATAAACAAAGGctcccatatttattttttagacccAGTGTCCATCAGTCCGAGGAAATAGTGTGCTGCTACTTTATAATAAACTATATGATGTATTATAA
>TCONS_00022099
GTTTCACTTAAGGACTGATGTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAActgaGGAACTCAGTGGCTTCACGCTGCGGCTGAAATAGGACCCCAGTTACCACAGCAGCCCCACAGAGTGTTTAGGTGTTCTTGGATGGACGATTTATTTTGGAATGGAGCTCCCCTCTCTCATCATGTCAACTAATTTCTGGCAATTTCTGGCATCTGTGTCCTTCCTCAGTGAAGTGGAGGGCTGCTGGCAGCTGTGTTTTACACCACACTGCCCTGAATACTCTATCAACCTCCTGCTGTGCCACACATCATCACATGATCACAAAGACCCGAGACCTGAGACTCTTCATCTCTCGGTGTCTCTTTCACCTATGAACACAATATGATAAATCTCGTAGTAAATACTACATTTACTAAAAGAAAGTCAAGAAGTGCCCCTAGACAGATGTGTTTACCCATTGTAAGGACCACCCATTGGCCCAAAAACAAAACCCAACGGTTAAGGTTAAGGTACGCTGTAAGGTTTAAGGTTTAAATTCACTCCTTTTGTTTATTTAGGATCAATTTAATTTCATGATTTATTTGACTCCAGTTTTAAATTATTCTCAAATTTAAGTTGGAATATTAGTTTTGTTACGATTTTATTAAGATTTGCCTGGTGGTTAtgcatgcactgcaaaaaatgctt
>TCONS_00020483
TCTAGGTATTGAGTCCTCAACCTGCTTAAAAGGAGGTAGAGAAGAAGCAGTGGACAGGAAGTAGTGTGCTCAGCACGTGGAATGGCTTCTTCACTTCGCTGTGCTTTGTTGGGGCTctcatttgagaaacatttttgttCTTATACTCAGATTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAAGTGTTCTTGGATGGACGATTTATTTTGGAATGGAGCTCCCCTCTCTCATCATGTCAACTAATTTCTGGCAATTTCTGGCATCTGTGTCCTTCCTCAGTGAAGTGGAGGGCTGCTGGCAGCTGTGTTTTACACCACACTGCCCTGAATACTCTATCAACCTCCTGCTGTGCCACACATCATCACATGATCACAAAGACCCGAGACCTGAGACTCTTCATCTCTCGGTGTCTCTTTCACCTATGAACACAATATGATAAATCTCGTAGTAAATACTACATTTACTAAAAGAAAGTCAAGAAGTGCCCCTAGACAGATGTGTTTACCCATTGTAAGGACCACCCATTGGCCCAAAAACAAAACCCAACGGTTAAGGTTAAGGTACGCTGTAAGGTTTAAGGTTTAAATTCACTCCTTTTGTTTATTTAGGATCAATTTAATTTCATGATTTATTTGACTCCAGTTTTAAATTATTCTCAAATTTAAGTTGGAATATTAGTTTTGTTACGATTTTATTAAGATTTGCCTGGTGGTTAtgcatgcactgcaaaaaatgctt
>TCONS_00020482
TCTAGGTATTGAGTCCTCAACCTGCTTAAAAGGAGGTAGAGAAGAAGCAGTGGACAGGAAGTAGTGTGCTCAGCACGTGGAATGGCTTCTTCACTTCGCTGTGCTTTGTTGGGGCTctcatttgagaaacatttttgttCTTATACTCAGATTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAAGTAAGACCAAAGACCAAAGGGAGTGGGAGATTGAACAAGAAGTCTGGAGACTTTAAGTTGGATAGAACTGGCAGGGCGATGTTGCTGGCTCATACACCTGGTCAGACAAAATATCAAGctgaGGAACTCAGTGGCTTCACGCTGCGGCTGAAATAGGACCCCAGTTACCACAGCAGCCCCACAGAGTGTTTAGGTGTTCTTGGATGGACGATTTATTTTGGAATGGAGCTCCCCTCTCTCATCATGTCAACTAATTTCTGGCAATTTCTGGCATCTGTGTCCTTCCTCAGTGAAGTGGAGGGCTGCTGGCAGCTGTGTTTTACACCACACTGCCCTGAATACTCTATCAACCTCCTGCTGTGCCACACATCATCACATGATCACAAAGACCCGAGACCTGAGACTCTTCATCTCTCGGTGTCTCTTTCACCTATGAACACAATATGATAAATCTCGTAGTAAATACTACATTTACTAAAAGAAAGTCAAGAAGTGCCCCTAGACAGATGTGTTTACCCATTGTAAGGACCACCCATTGGCCCAAAAACAAAACCCAACGGTTAAGGTTAAGGTACGCTGTAAGGTTTAAGGTTTAAATTCACTCCTTTTGTTTATTTAGGATCAATTTAATTTCATGATTTATTTGACTCCAGTTTTAAATTATTCTCAAATTTAAGTTGGAATATTAGTTTTGTTACGATTTTATTAAGATTTGCCTGGTGGTTAtgcatgcactgcaaaaaatgctt
>TCONS_00020481
TCTAGGTATTGAGTCCTCAACCTGCTTAAAAGGAGGTAGAGAAGAAGCAGTGGACAGGAAGTAGTGTGCTCAGCACGTGGAATGGCTTCTTCACTTCGCTGTGCTTTGTTGGGGCTctcatttgagaaacatttttgttCTTATACTCAGATTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAActgaGGAACTCAGTGGCTTCACGCTGCGGCTGAAATAGGACCCCAGTTACCACAGCAGCCCCACAGAGTGTTTAGGTGTTCTTGGATGGACGATTTATTTTGGAATGGAGCTCCCCTCTCTCATCATGTCAACTAATTTCTGGCAATTTCTGGCATCTGTGTCCTTCCTCAGTGAAGTGGAGGGCTGCTGGCAGCTGTGTTTTACACCACACTGCCCTGAATACTCTATCAACCTCCTGCTGTGCCACACATCATCACATGATCACAAAGACCCGAGACCTGAGACTCTTCATCTCTCGGTGTCTCTTTCACCTATGAACACAATATGATAAATCTCGTAGTAAATACTACATTTACTAAAAGAAAGTCAAGAAGTGCCCCTAGACAGATGTGTTTACCCATTGTAAGGACCACCCATTGGCCCAAAAACAAAACCCAACGGTTAAGGTTAAGGTACGCTGTAAGGTTTAAGGTTTAAATTCACTCCTTTTGTTTATTTAGGATCAATTTAATTTCATGATTTATTTGACTCCAGTTTTAAATTATTCTCAAATTTAAGTTGGAATATTAGTTTTGTTACGATTTTATTAAGATTTGCCTGGTGGTTAtgcatgcactgcaaaaaatgctt

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:0010866 regulation of triglyceride biosynthetic process biological_process
GO:0010867 positive regulation of triglyceride biosynthetic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0045495 pole plasm cellular_component
GO:0071595 Nem1-Spo7 phosphatase complex cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043186 P granule cellular_component
GO:0060293 germ plasm cellular_component
GO:0034584 piRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022098 False 781 lncRNA 0.41 3 6512346 6556501
TCONS_00020480 False 899 lncRNA 0.42 3 6512346 6556501
TCONS_00021782 False 614 lncRNA 0.44 2 6512481 6549311
TCONS_00022099 False 783 lncRNA 0.43 4 6533822 6556117
TCONS_00020483 False 840 lncRNA 0.42 3 6533822 6556501
TCONS_00020482 False 1033 lncRNA 0.43 4 6533822 6556501
TCONS_00020481 True 915 lncRNA 0.43 4 6533822 6556501

Neighbor

gene id symbol gene type direction distance location
XLOC_010424 NA coding downstream 28119 6476016 ~ 6484227 (-)
XLOC_010423 mboat1 coding downstream 87528 6395311 ~ 6424818 (-)
XLOC_010422 ndufb9 coding downstream 121067 6386941 ~ 6391279 (-)
XLOC_010421 NA coding downstream 125704 6383530 ~ 6386642 (-)
XLOC_010420 scgn coding downstream 134674 6356460 ~ 6377672 (-)
XLOC_010426 NA coding upstream 31521 6588022 ~ 6591170 (-)
XLOC_010427 NA coding upstream 48884 6605385 ~ 6635296 (-)
XLOC_010428 NA coding upstream 91529 6648030 ~ 6651719 (-)
XLOC_010429 mbpb coding upstream 246969 6803470 ~ 6849781 (-)
XLOC_010430 AL845419.1 coding upstream 272051 6828552 ~ 6829635 (-)
XLOC_010626 CR392024.2 misc upstream 14338611 20895112 ~ 20895175 (-)
XLOC_010419 NA non-coding downstream 160656 6291173 ~ 6351690 (-)
XLOC_010418 NA non-coding downstream 263100 6248023 ~ 6249246 (-)
XLOC_010416 BX957314.1 non-coding downstream 641657 5870573 ~ 5870689 (-)
XLOC_010436 NA non-coding upstream 951600 7508101 ~ 7621115 (-)

Expression


Co-expression Network