CI01000066_00151325_00157474 (OPTN)


Basic Information

Item Value
gene id CI01000066_00151325_00157474
gene name OPTN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 151236 ~ 158144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_00151325_00157474.mRNA
ATATAAATAGGAAATTATGACTCTTATACTCGAATCATAATAGGGGTGTCGAAAAGCCCCTCCGTTTGCCCCAGTTCGGAGAGCGTCATATGACCTCAGCAGGACAAACGCAGGGAAATCCCGGGCCGCGTCCTGACATCACCGTCAGCTGGTTCAGCGCTGTGAATAGAGCACACTCTAGGCTAACGGACACTGAAAACATGGCATCTGGTTCATCGATGATGAACGGGGACATCAGTCACCCACGCGGGTCCGGCCCGGGGAATGTGGGCAGTTTAGAGGAGACCCTCCAGCAAATGAACACTCTGATCAAAGAGAACAGAGAGCTGAAAGAGGCCCTGAAACAGACAAACTTGTCCATGAAGGAGAGATTTGAGGGTCTGTCGGCATGGAAGGAGAAGCAAAAGGAGGAGAGAGACTTTCTGGAGCAACGATTAGAGGAGGCCAAAACCAGACTGACTACTGTGGATGCAGAGAACGAGATGCTGAAGAAACGAGTGGAAGAGCTGGAAAAAAGTGGAGCCGAGTGTTTACACACTGAACTGGAGGCAATGAGAGGACAGATTGGTCGTCTTCAGGCTGAGAAGAATGATCTGGTAGCATTGAACTCCGAACTCCAGCTCAAAATGGGACAAGGTTCACCTAGAGACTCCTTCATTGAGATTAGGATAGCTGAAGATGATTTAAAAGTGACCAGAGATTTGCCCGATACACAAATGGAGCCATCTGCTTTCTGCATGCCAAAGGCTGAGTCGGAGGAACAGACAGTGAGGCAGCTGCTTCACTCCCTCAGAGCAGAGACTGATGCGAAGGAGAGACTGCAGCTAGCGCTCCAAGAGGCACGTGGGAGAATTGCAGAGTTAGAGAACAGACTGGATCATGCTGACAGCAGCGCACAGACATCTCTCCCTTGTACAACTGAAATCAACTCAAGCGCTGAGGTGAAGAATCTGGAGGATCAGTTGCTGAAGCTCTGCAATGAATTGAAACAAGCTCAGATCAAACTAGATGATGCTGAGAACATGAAAAGAAACCTGCAAGACAGGTGTAAAGATTTGGAGCAAGATCTGGGCACCTTAAAGACTCAGCTTGGAGAAAAACAGAAGGTCCAGGCTGAGAACGACTGTCTGAAGGTTCAGATGGAAAGTCTCCAGGCTGCTATTAAACTGGAACAGAAGAAAACTCAGGATGAGAAAAACAACCTAAACCAGCTGAAAGATGCCTATACCAAGCTGTTTGAAGACTACAATGAGCTTCAAGAGGAAAAGAAGAAGAAAGAGGGTAGTGTATCACGGGAAGAGTACGATGACCTCCAAACCAGGTTTGCTACGGCTGAAAAGGCGCTGGCAGACAAACAGCTGAAGATTGATGAGATGAAGATGGAAATCTTCCAGAAGGAAAAGGAACTAGAAACTATCTCTGTTTTCCAGGCTCAGGCAGAGATATATTCCTCTGACTTCTACGCAGAAAGAGCAGCTCGGGAGAAGATTCACGAGGAAAAAGAGCGTTTGGCCACTCAGCTGGAGTATGTGAAGAAACAAAACAGCCAACTTCAGGAGGAGATGGAATCACTTGGCAGGCATTCCATGAGCGAGATGCAAAGGAGACATGTGCCACGTGGGGCCAATCCACAAGGCCCCGCATCTCCACACCATCTGCAAGGAGGCGATTGGCAGCAGCAGAATATTCCAGAACATGCTTGTCCCAAATGTGGGGAAGTCCTACCTGACCTGGACTCTCTGCAGATCCACATCATGGATTGCATCATCTGAGCCTGTTGCCTAATAACCACACCAGATCCCCCCTATATGTGAATGAGTGGTTTGATAGCTTTAACTTCAAGCACCATAATGCTTCAATAACACAGGTCTATAAACCCTGCAGCCTAAAAATACTGTACATTATCAGTGTGGGTGGTTTCAGATCAATAGATGTTAATGGTCGTGAGTGAGGACTTAATGTGTAGCTTTGGTTCTGACTGGTTGGATTAATCTAAATACGCCATATATAACAGAAACATTTATTTAAGCTGCTTTAGGACAATTTATCTATGTCGACTATTAAGAAAAAGTATATTATGTTGCAGGTGGGCAATCAATGTGGCATATATTACACAAAAATCTATTAATCTGTTGTGGGCTAAATACATTACGCATTGCAAAAATATTTTTGTTTGAGATTAACTTTAAATGTTCCTGAGAGAATCATTTATTTTAAAGACTTGAAGCCTCAGTTAGTTAGTGGTTAAATATATTTTCATTCTACTCTCAATGCCCAATATTATACAGGCAGAGATCAACAGATAATGTTTTTTATTATTATTATTATTTGTTGGATCTGTTTAACTGTTAAAGCACTTTATCCTGTTTGATACGCATGGTTAGTGAGTTAGTAAGATTTTGGGTTACTTTGAATAAGTAGATTAACACCTACCTAAATCTA

Function

symbol description
optn Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within axonogenesis; defense response to bacterium; and vesicle localization. Predicted to be located in autophagosome; perinuclear region of cytoplasm; and recycling endosome. Predicted to be active in Golgi apparatus and nucleus. Is expressed in several structures, including eye; otic vesicle; periocular mesenchyme; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Paget's disease of bone; amyotrophic lateral sclerosis (multiple); and glaucoma (multiple). Orthologous to human OPTN (optineurin).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19946 OPTN, FIP2; optineurin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_00151325_00157474.mRNA True 2442 mRNA 0.44 14 151236 158144

Neighbor

gene id symbol gene type direction distance location
CI01000066_00109609_00131845 CAMK1D.L, CAMK1D, CAMK1DA coding upstream 19057 109609 ~ 132179 (+)
CI01000066_00063935_00066860 CDC123 coding upstream 84043 63935 ~ 67193 (+)
CI01000066_00043800_00047188 UCMAA, UCMA coding upstream 103481 43492 ~ 47755 (+)
CI01000066_00019553_00029834 PAHX, PHYH coding upstream 120705 19447 ~ 30531 (+)
CI01000066_00002211_00003080 NA coding upstream 147902 2123 ~ 3334 (+)
CI01000066_00273310_00276428 NA coding downstream 115013 273157 ~ 276498 (+)
CI01000066_00300974_00304363 NINJ2 coding downstream 142092 300236 ~ 304408 (+)
CI01000066_00344664_00393673 NA coding downstream 186520 344664 ~ 394325 (+)
CI01000066_00400218_00405333 NA coding downstream 241636 399780 ~ 405603 (+)
CI01000066_00419486_00436877 NA coding downstream 260774 418918 ~ 437551 (+)
G270531 NA non-coding upstream 93539 48452 ~ 57697 (+)
G270545 NA non-coding downstream 26052 184196 ~ 184427 (+)
G270546 NA non-coding downstream 28065 184528 ~ 186677 (+)
G270547 NA non-coding downstream 36542 194686 ~ 196431 (+)
G270567 NA non-coding downstream 66990 225134 ~ 275259 (+)
G270586 NA non-coding downstream 93929 252073 ~ 252391 (+)
G270973 NA other downstream 1686308 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 2111025 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 2144066 2296071 ~ 2305637 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location