CI01000066_00679999_00685380


Basic Information

Item Value
gene id CI01000066_00679999_00685380
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 679652 ~ 685380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_00679999_00685380.mRNA
ATGCAGGGATATGTATGGAGTTCAAATCAACGTCCCCCGCCAAACTATCAAGAACGTGCTCCACCTCAGTACCAAGAACGTGCTCCCCCTCAGTATCAAGAACATGCTCCCCCTCAGTACCAACAATACCCACTTCAGTACCAAGATCAATTCCCGCCTGATTACCAAGACTTCAGAAATGATCAACCCAATATGTTCCAGGCACAGTTCAACACCCAATTTGCTGCAAATCATTGCAAATCAAAAAACTTTAGACCAAACATGCATGGATATAATACACAGACAAACCGGGCCCATCCCCAGTACCCGTGTGCTGCCTCCAACACACAGCAGCACTACCCATCTGAAAACCCCAACACATATAGGTGTTATGCCCAATTTGCCATGCAATCAAACCCTTCCTCCCCACAGAACTACAGAAACACAGGCCACAATCAAGCTCACATGTATTGGTCTCCACAGTCAGACCATGGCAGCTCTGTGGGTAACAACAGGGGTTGGAGTTCCCACACTTCCAGTAATGGCAGCTCTTGTTCCATGAACAATCAGCAACAACTTCAACCTCCTAGAACAGCTCCTCGTCATCATCAACAACATCAGTTGTCTAGACAACACTCAGGCAAACAACATAATATGCACCACCGGACACAAGGACACCGCCAACAATCCTCTTCTTGGGCCCATAACAATGGAGTTTCCCATAGAATTTCCAACAATCAAGCTCCGAGCCGGACCACGGCCAGTTATACCTCATGCAACCTTACGACACCACCTTCTGGAGCACAGAGTGACATTTCATTGCCTTCCAATAACTTAAACCAAAGTCCTGTTAACCAGAACCAGCCAGAACTGAGGTCAAATATAGGTCCAGCTGTATCGACAATCCAGTCTCAGAATAACCAAAGCACTGGGCAACAGTCTCAAGGCACAAACTGTGGGACACATAACGTTAATGAAACCTCTCAAATGACACGGACCAATGAAGCCCAGCCTCAGCCTCACTCTAGATCTTATGTTAACACGCTAATATATAGATTACTGTGTTCAAATGGCAACGAACAAGCAAATAAGCAGCAATCAGTTGAAGGAATTGCACACCAGAACACTTGTTCAGAACAGTCGGAGGTTTGTGCAACCAACAGGACTGACCAACATTCAAAGGAACCTTCTTCTGAACCTAGTGCACGGTGTACAGTTGAACCACCCAGTAAAAGAATGAAGTATGATGTGGTTCAGAGAGACTATTGGAACAAAGAAACAAGTGTGTCCAAAGATTTTGGAGCGCAATCTGTCCGACCTGGTAGCCATCAGACAGGTAGCAATGAGAAAAGACCTAAAGGAATGAGTCTACACAGCATACAGTACAGTACGGACCCAGCGGACTGTCTTGAAGCGGTGTTTGCACTACAGAAAGTCTCTCAGCAAGTTCACAAGGCCATAGCCATCGTTCCACCCATTTCCCAGCAGACCTCAAACACTGCACTGGTGGCTGATACCAACCCAAAAAAAGCTGACAGTCCACCGTTAAAGATTGATTCCGTTTGGACACTTGTTGAAGAGTCTGATGCACAAAAAACTGTAAATGACCAGTTGCCTGAATCCCCTTCACCAACGGCTCAACAAGAGGACAAAAGCCTTGAAATTGAGACTACAAGCAACATTGCAGACTCTGATAGATGCTCTACTAGCCCAGTTGAATGTCAAAATAATGCTCAACAAGGTGACGGTGATTCAAGTGATGCTTCATTAGACTTGTCCAGTGTGCCAGTGGTTAAGTACACACTGGAGAAACTAATGGACTTAGTGAAGTCTTTAGAGATAGCGGAATTATCATCCAGATATCCAGATGAATCGGAGAGCTTTTTTAATAGGATCTTGAAACTCTATTGGAATGGGAGTCAAGACAATCTTGTGGAGGCATTGAAATCATTTAGAAAGGAGGCAGAGCGGCATTCATCTGTAGATATCGTATGGGATTATGAGTCTGTGGTATTTGAAAGCATTGAAACCGAAAACCTAAAGAAGCTTGCTCATTGCGACGTTCTCAACAATGAGATGTATTCATCGTCTGAGGAGTTCAGGTCTTCTTGGTTAAATGTTGATGGACAGCCAGCTGATATTGAAAAGGTGCTTTCAGAACCACTGTTGGATGACATAACTGTGAGCAAGGCAACATCACAGGTATTTTCAGATAAGACTGTTGTCACGTCAACCAATTTAGGTGCGAATTCCCACAAAGTCATGCCTGAGGTTTCATCCGCTGAGAAAAGTGCAAGACCAGACATGTGTAGTCCAGCAGCTCTTCTCAAACCCCAGTCAAGAAATGACAGGGAGGAAATGGCCACCGAAAACAATTGTCATTCATATGCAGGGCTGTCTAGAATGACATATCTGAGCAGCGTCTCCAGTGAGAAAGAAACATTCAAGAAGCAAGTGGACATCAATCAAAACCACAATTTTAACACAAAACCTTCAGATAACTCCCCATTAGCAGAAAGATCTACAGTAAAACTTACAGACTGCAGCAATGAAATAGAAGTATTCAGACAAGATCATTCTGAGCGAACATGTCATAATTTGTCTGTGTCAGAATCACTTCCTCTGAGCCCTGGAAACAGTGTTTCAGATGGTGTAAAAAACTCTGACTTGTCTTTTTCTACCGAGACTCTTTGTAATTCTAAGGATACATGGCAGATAGAAGATATTTCTGATGATGAAAATCCAGGCAATAAAGAGGCTCTTAATAACTCTTCAGACATTGGGCTGGTAGAGGATATTTCAGATGCTGGAAATTCTGGAAATAAGGAGGTTCTTCCTATCTCCTCAGACACCTCACCGGTAAAAGATATTTCAGAGGATGAAAATACTGGAAATAAGGAGGTTCTTAATAACACCTCAGACACCTGGCCAGTAGAAGATATTTCAGACGCTGAAAATTCTGGAAATGAGGAGGTTTTTCCTAACTCCTCAGACATCTGGCTGGTAGAAGATATTTCAGAGGATGAAAATACTGGAAATAAGGCGGTTCTTCCTAACTCCTCAGACACCTGGCAGGTGGAAGACATCTCTGAAGATGAGAATCCAGGCAATAAGGACACTTGTATTAACTCCTCAGACATATGTGTGGAGGAAGATGTTTCTAATGATGAAAATTCAAGCGATTCCTTGTTAATGGAAATCACAGTGCTATCATCTGAAGATGCTAAAACATTTTTCCAACAGTTGGAAAATGAACCTGAATGTGGTGTCAAAACAACTACATCAACATTTGACTGCCCGGATCTTGTAGCGTGCTTTGATGCACCCAGTCAGCCTAACCATGAGTACAACAAAGCAGATACTTGCTCTCTCTGTGGTACCAAAATTACGATATCCAATTCCACAAATGCGATGGACAATGATGGTGATCATTTCTGCTCCCAGTGTTGGGAACAGGCTCCATTGCTTGAGCTAGAAGAGGAGCCATGCTCTCCTGTGAAAAATGAGGCTGATGTACTGGGCTCTCCTGCTAAATCCAACAAACAAGGCCAAGACTGTAGTCCGCCATGTCTTAAACTGGAAGTCAAGGATGTGGCTTCAACAAAGGAATGCATTGTGTATGAAAGGCTGACAGGACAAAAAAGTGACTATATGGTAAGATTAGGACTGGTACAAAATTCCCCAACTCTTGAACTGAAAGTCAAGGAGCTAAATGTTACTTCACCAGAGACATGCACTGTGGACGAAGGACAGAAAAGGGACAGTATTGTAAAATCAGAACTGGGGGAAAAATTTTGTCCACCATGTCTTGATTTGCAAGTCAAGAAGCCAGCTGTTGCTTCACTAAAGGAAAGTATTGGAATTAAAAGACTGTCTGGACAAAAATGTGAAGGCATGGTAAAATCAGAACTAGGACAAACCCGTAGTCCACCACCTCTTGATCTAAAAGTCAAGGAGCTAACTGTTACTTTATCAAAGAAATGCATAGCAGATGAAAAAAGAGACTGTATGGTAAAATCAGAACTGGGACAAAATCATAGTTCACCATCTCTTGAACTGAAAGTCAATAAGACAACTGTTGCTTCAACAGAGGAACGCATTGATGATGAAGGACGGACAGGACAAAAAAGTCAAAGTTTGTTAAAGTTAGAACCGAGACAGAATTGTAGTCCACCATCTCTTGAACTGCAAGTCAAGGTGCCAAATGTTTCTTCTCCAGAGGAATGCACTGAAAATAATAAAAGATTGACAGGACAAAAAAGAGACTGCATGGTAAAATCAAAACTAGGTCAAAATTGTAGTCGACCAAATCTTGAACTAGAAGTCAATGAGCCGACTGCTGCTTCAACAGAGGAATGTACTGAAGATGAAAGACTGATGGGACAAAAAAGTGAAAGTTTGTTAAAATCACAACTGAGACAAAATTGTAGTTCATCATCTCTTGAACCGCAAGTCAAGGTGCCAAATGTTGCTTCCCCAAAGAAATGTATTGCAGATGAAGGACTGGAAAAATCAGTGACACAGAAAGTGCCTGAAATTCAGAGGCCAGCTGAACAGGAGCTAACCAAGATTCAACCAAATAAGCAGAAAAATGATAAAACAGAGAAAAACAGATTGGCCAAGCCCCAACTGCTCTTCAAATGCAACAAACCACCTCTCAAAAAATCTGCCTTTTTTAAGCATAAGCTAAAATCTGGTAGCACTAGGACTGGTTCTGATGATTCTGTGCTTTTCACTCCAGATATTGTGGTTAAAAAGAACTTGCCACAAAAGAAAAAAAATCTCAAACGCCCTAGTGGTGAGAGTCAGGACTGCAGCAAGGTGAAAAAATTCAAAGAACATAGGCAAGAAAGACAAGATTATCCTGACAGAACCTCACAGGACCATAGAGAAACCCTACAGAAAGTTACAGAGAAAGTGCCCGGTCATTCAAATGACACGACACCCCACGGGTCAAAAAAGAAGCTTGAGCTGCGTGGCATTCTGTCAGTGAATAAAACTAAAACAATTGAGCCAAAGAAAGTGAGATTTGATTTATATGGATCCAACAGAGAAAAACAGATCTATGCTCATGAGCGGCGTTTTTCAGCCCCTGCTAGCTTAACGGTCTCTGATACTTGCAAAGACTATACCGATGTGCTCTCTGCTAAACAAAAAGTTCTCAACCAGTGGAGCAGCACCTTCATACCTAAAACAAAGAGCTTTCATCCCAGGTCACCACAGGAGGGAGCACCACAGAAGAAAAAAACACAGAAAACTCAGGACCTCTTAAAGTTAAGCATTAGTGCATTAAAAAGCCATTTGACTCACAGAGCAAAGCTTCAATCCAGTAGCGAGAAAGAGACAAATCACTTTAGAAAACCAGTATTTCATCGAAATCTTACAAAAACACTAAGCGGCTAACCTAGTTGCTTTTATTATGTTTACTTAAATATGTTTACACATAATAGCTGTTGCTGAAATGTGTGACAGTTTTCTGTTGATGACAATGATGGATGTTGTTTTTTTGTTTTGTTTTGTTTTTTATTGTTACTGAAAGCAAAATAGAAAACTTTATTTTTCTAAGGTGTTATTGTTTGTAATATACTCCACTGTATGTGACTGAAAATGACTGCAATCAGTGTTATTTTATAAGAATATTTTTAATAACTATTTTAAGTACTTCTTGATGATGTTACATAGTATAAAATATATTTGTATTTGGAAATACAAGACAATTTACTGGAAAGGCAGTTGTGTCACTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_00679999_00685380.mRNA True 5729 mRNA 0.41 1 679652 685380

Neighbor

gene id symbol gene type direction distance location
CI01000066_00675433_00675726 NA coding downstream 3441 674881 ~ 676211 (-)
CI01000066_00642830_00643160 NA coding downstream 36403 642518 ~ 643249 (-)
CI01000066_00597946_00601637 FBXL13, FBXL14B, FBXL14, FBXL14.S, FBXL14A coding downstream 78015 597710 ~ 601637 (-)
CI01000066_00535081_00543543 NA coding downstream 135735 534908 ~ 543917 (-)
CI01000066_00438633_00446467 NA coding downstream 232951 438001 ~ 446701 (-)
CI01000066_00711133_00728657 TTLL12 coding upstream 25753 711133 ~ 728657 (-)
CI01000066_00730057_00737661 PNPLA3 coding upstream 44335 729715 ~ 737661 (-)
CI01000066_00788981_00792403 NA coding upstream 103034 788414 ~ 792768 (-)
CI01000066_00805568_00827944 MPPED1 coding upstream 119117 804497 ~ 827944 (-)
CI01000066_00832790_00856736 SCUBE2, SCUBE1 coding upstream 146926 832306 ~ 857910 (-)
G271772 NA non-coding downstream 12816 664537 ~ 666836 (-)
G271774 NA non-coding downstream 17550 649459 ~ 662102 (-)
G271849 NA non-coding downstream 23449 655000 ~ 656203 (-)
G271838 NA non-coding downstream 49898 628261 ~ 629754 (-)
G271788 NA non-coding downstream 55924 619707 ~ 623728 (-)
G271786 NA non-coding upstream 60556 745936 ~ 752890 (-)
CI01000066_00938534_00939532 NA non-coding upstream 252176 937351 ~ 939532 (-)
G271889 NA non-coding upstream 280840 966220 ~ 966453 (-)
G271890 NA non-coding upstream 281722 967102 ~ 967354 (-)
G271891 NA non-coding upstream 336653 1022033 ~ 1022246 (-)
CI01000066_01823227_01826380 NA other upstream 1137649 1823029 ~ 1826817 (-)
CI01000066_01843043_01848783 NA other upstream 1156299 1842554 ~ 1849466 (-)
G272221 NA other upstream 1273722 1959102 ~ 1985228 (-)

Expression


Co-expression Network