CI01000066_00858315_00871460 (SCUBE1)


Basic Information

Item Value
gene id CI01000066_00858315_00871460
gene name SCUBE1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 858278 ~ 871541 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_00858315_00871460.mRNA
AGAGGAGTGTTTGTAATGGGAGATTACATGACTGTAACTCAGGTTTCTCTCTTTCTTTCTGTCTTTCTTTTGGTAGACGGGATGAACTGTATGAATAAGGACCATGGCTGTGCCCATATCTGCAGAGAGACTCCCAAAGGCGGTGTGGCATGTGAATGCCGTCCAGGATTTGATCTGGAGGAAAATCAACGTGACTGCAAATTGACATGTAACTATGGAAATGGTGGTTGCCAACACACGTGCGATGACACCGACGTGGGGCCCGTGTGTGGATGTCATCAGAAATATGCCCTGCATTCGGACAGCAAGACCTGCATTGCAAAAGTACATAAGCTGGAGAAAAGGGTGGGTTGGGTGAGAGAGAGATATATGTACTTGTGTCGGTTTGGGAAGATGTGCTTGATGATGGAAATTTCATCGCTGAACTCTCCGTGTGCAAAACACATTCATCATCCTGATAATGGTGGAAAAGCCAACCAGTCTGCCCATGGAGTTCTGCCATATTTGCCGAAAGGGAAAACTTTATATGCCATGCGGGGTTATTTGCGCTTCTTCATGGCTTTACGCCTCTTGGCTTTGGTTTGGGCTCAAACGCCAAGGTGGTCAGGCAGCCCGCGTCCAGGCGTCCACGTGTCGCCAGAGGCGGAGAAAGATGAGGCTGCAATTGAGAGCTCTGAATTCAATACCACGTCAGTAGCTGATGTGGACAAGCGGGAGAACGCTAGATTTGACACTCGGTGTTCCCGCTTCATCCTGCCCTCCTGTCACAGCTGGGGCCAACAGCACCAGGATGTGACCGATCCTGACATATTAAACTGGAAAGTCGGTGTCAGAAAGAAAGCTGCTATTGTACCCAGGCATGATGGGAAACCCAGAGACTGGAGAAGAAGAGAAGGCGAGACACCAAACACAAAGAGGTGTTTTGAAAAGGTGGTCACTTAGCAGCAGGGGGGAATTGAAGGAATTTGATCTAAATAAA

Function

symbol description
scube1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell surface receptor signaling pathway; muscle cell development; and primitive hemopoiesis. Located in plasma membrane. Is expressed in several structures, including axial chorda mesoderm; blastomere; central nervous system; optic cup; and solid lens vesicle. Orthologous to human SCUBE1 (signal peptide, CUB domain and EGF like domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_00858315_00871460.mRNA True 979 mRNA 0.49 6 858278 871541

Neighbor

gene id symbol gene type direction distance location
CI01000066_00832790_00856736 SCUBE2, SCUBE1 coding downstream 368 832306 ~ 857910 (-)
CI01000066_00805568_00827944 MPPED1 coding downstream 30334 804497 ~ 827944 (-)
CI01000066_00788981_00792403 NA coding downstream 65510 788414 ~ 792768 (-)
CI01000066_00730057_00737661 PNPLA3 coding downstream 120617 729715 ~ 737661 (-)
CI01000066_00711133_00728657 TTLL12 coding downstream 129621 711133 ~ 728657 (-)
CI01000066_00885041_00912917 SCUBE1 coding upstream 13003 884544 ~ 912917 (-)
CI01000066_00938534_00939532 NA coding upstream 65810 937351 ~ 939532 (-)
CI01000066_00975554_00997209 CHST11 coding upstream 103447 974988 ~ 997417 (-)
CI01000066_01031147_01037984 HCFC2 coding upstream 159346 1030887 ~ 1037987 (-)
CI01000066_01046248_01048613 AVPR1AB, AVPR1A coding upstream 174680 1046221 ~ 1049364 (-)
G271786 NA non-coding downstream 105388 745936 ~ 752890 (-)
G271772 NA non-coding downstream 191442 664537 ~ 666836 (-)
G271774 NA non-coding downstream 196176 649459 ~ 662102 (-)
G271849 NA non-coding downstream 202075 655000 ~ 656203 (-)
G271838 NA non-coding downstream 228524 628261 ~ 629754 (-)
G271889 NA non-coding upstream 94679 966220 ~ 966453 (-)
G271890 NA non-coding upstream 95561 967102 ~ 967354 (-)
G271891 NA non-coding upstream 150492 1022033 ~ 1022246 (-)
G271896 NA non-coding upstream 167324 1038865 ~ 1039137 (-)
CI01000066_01823227_01826380 NA other upstream 951488 1823029 ~ 1826817 (-)
CI01000066_01843043_01848783 NA other upstream 970138 1842554 ~ 1849466 (-)
G272221 NA other upstream 1087561 1959102 ~ 1985228 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012814 scube1,LOC106609323,LOC106576154,LOC107726032 coding CM030125.1 CM030125.1 8738170 ~ 8747560 (-)