CI01000066_01021163_01021546


Basic Information

Item Value
gene id CI01000066_01021163_01021546
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1020687 ~ 1022630 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_01021163_01021546.mRNA
CAATATAAACAACAGTTATGAACAGAAACAGCAGGGCGAATGTATGTCAGCTGTACGTCAGTATCGATGTATGGATGTTTGTACAGCGTGTCAGCTCTTTGATTCAGTACAGTGACTCTACTGTACCGGTCACCGGAGACAATGACCATCCCTCCACAACACAGCCCTAAACAACGGACCCCGGCTCTACCCATTGTGCTTCATATAAATAAAAGATTAAAAATGCATCAAACTGAACGGTATTATTGATAGGCTACAACAGAGAGCAGGAGCTTTGATGTGAGTCAGTCTATCATTCACTCTCGATGCTGCTGATCGATGCGCTCCTTTAAACAGCTCATTGATTATTAATGACATTCTTCCACACCAAATCACCAAGTAAGGAGCGACAAAAGGGGGAAAGGAGCATCTTAAAACCTTTAGAATGAAACCATCACGAAGTCCTACCTGGTTGGAACATACTTTGGAAATAGAAGATGACCAGAATAAAAGATCCTAAACAAGTGGCCAGCACCATCCGGCAGATCCTACTCATCCTCATGAGGTCCAGTAACGTCTGTTTCATGGCTGGGCACGAAGAGACGGAGGGACGGAGGGAGGCTGCCGAGCCCCGTACAGCGGGTCTGTGTTTGATGCTGATGCTCTCGCTGCTGCCGCCTGCCTGCGCCCGTGTCTCAAAGATCTCAGCGCAGCTCCCTGGAGTGCGCTACCTTCCTCCGCACACTAGACTACAGTGGCGAAACTCCGCCCCTTCTCGCCGCGCGGTGAATGAGCGCGCCCACGCTTTCATCTTCGTTTCCATTGAACTTGTCGCAATCATTTCTCGCATTTCCTCTCTATTTTTCAAAGTTGAAACTTGATTTTCTTCATCAGAAATTTATAAAAAGAGGTCAAAATCGTCATTTACTCACCCCCAAGTTGTTCCAAACCTGTATGAGTTTCTTTCTTCTGCTGAACACAAAAGAAGGTATTTTGAAGCATATTGGTAACCAAACAGTTTGGAAGTCAGTGGGGCCCATCAACTGTTTGGTTAGCAACATTTATCAAAATATCTTCTTAACCCCTTAAACTGTTTGAGTATAGACATGAAAATGCACAATCTAAACCTAAAAGGTTGTAATTCAAGAATGCTTTGGAATATAGACATAAAGCTGGTCTCGTTTTAAAGAGGACACTCGGCAGATTATCCCTGAAGTAAAAGCATGTTCAAATAAAAAGCAAATAAAAGTATGAAAAAGTTATGGGTGTTTATATTTACTGTAAATCAAATGTAATGTACTAAACATTTTTATTTTATATAAAACATATATTTTATTAAATATCTTTTACTCTAAAATTGCTATCAAAACAAATCCATATGTCTAAACATGTTCTGTTCCAAATTTGAAGTTGATATTGCAAAAATTAAAGTTCCCATGAGATTTTGTTTAGGCGCTGTACCAAAAATATCCACCGGGTGTCACCCACATTCCATTGATGCACTCTCCTGTAACAAATTTATAAATTTCTATCCAAATGTCACTTCTATCACACAAAACATGTATGAAACCTTGAGACTCAGACCTTTCAGACGATATGTGTTTTGTCAAAAAGTTTTAAATATAAAGTATTTAAAATAAAATCTGTAATATGAAATATGACACCCGCCCACTAGGGGAGGAGCCCACTAAAAGAATTTTCCATGGTAACACAATGGCAAATTTCAAAACGGTTTTCACAGGATGAATTTTGGGTTCATAAGCTTTCGAATGATACCTAATTTATGATGATTACTAAAATATGTGATATGAAAAAATGCGCTAAATAAAAAGAGCGCCAAGCGTCCCGTTAGCAGGAAGAAATTCATACAGGTTTGGAACAACTTGAGGGTAAGTGATGACAAAATTTTCATTTTTGGGTGAACTATCCTTTTAAGTTGCTTAAAAAAATTAGGCAGCGTTACAA
>TU307334
CAGTGGGGCCCATCAACTGTTTGGTTAGCAACATTTATCAAAATATCTTCTTAACCCCTTAAACTGTTTGAGTATAGACATGAAAATGCACAATCTAAACCTAAAAGGTTGTAATTCAAGAATGCTTTGGAATATAGACATAAAGCTGGTCTCGTTTTAAAGAGGACACTCGGCAGATTATCCCTGAAGTAAAAGCATGTTCAAATAAAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_01021163_01021546.mRNA False 1944 mRNA 0.39 1 1020687 1022630
TU307334 True 213 lncRNA 0.36 1 1021693 1021905

Neighbor

gene id symbol gene type direction distance location
CI01000066_01015249_01016975 NA coding upstream 3353 1013769 ~ 1017334 (+)
CI01000066_00941480_00966469 SLC41A2B coding upstream 54216 941480 ~ 966471 (+)
CI01000066_00925751_00935641 ALDH1L2 coding upstream 84835 925751 ~ 935852 (+)
CI01000066_00915548_00922666 SAMM50L, SAMM50 coding upstream 97453 915548 ~ 923234 (+)
CI01000066_00738687_00750408 MGC115026, ST4A1, SULT4A1, SULT4A1.L coding upstream 269947 738687 ~ 750740 (+)
CI01000066_01024399_01028864 NFYB, NFYBA coding downstream 1769 1024399 ~ 1028889 (+)
CI01000066_01110448_01145292 SRGAP1A, SRGAP1B, SRGAP1 coding downstream 87720 1110350 ~ 1145983 (+)
CI01000066_01165569_01184166 IPO8 coding downstream 142939 1165569 ~ 1185012 (+)
CI01000066_01187709_01232765 TMTC1 coding downstream 164666 1187296 ~ 1232765 (+)
CI01000066_01236972_01244870 NA coding downstream 214342 1236972 ~ 1245112 (+)
G270803 NA non-coding upstream 11877 1008046 ~ 1008810 (+)
G270695 NA non-coding upstream 192147 787249 ~ 828540 (+)
G270675 NA non-coding upstream 265301 755058 ~ 755386 (+)
G270646 NA non-coding upstream 342585 673828 ~ 678102 (+)
G270650 NA non-coding upstream 349262 671193 ~ 671425 (+)
G270801 NA non-coding downstream 34379 1057009 ~ 1058689 (+)
G270827 NA non-coding downstream 36885 1059515 ~ 1059734 (+)
G270831 NA non-coding downstream 51589 1074219 ~ 1074706 (+)
G270855 NA non-coding downstream 300865 1323495 ~ 1324025 (+)
G270864 NA non-coding downstream 331485 1354115 ~ 1355390 (+)
G270546 NA other upstream 834010 184528 ~ 186677 (+)
CI01000066_00019553_00029834 PAHX, PHYH other upstream 1000414 19447 ~ 30531 (+)
G270973 NA other downstream 821822 1844452 ~ 1847752 (+)
CI01000066_02274624_02277624 NA other downstream 1246539 2274557 ~ 2278119 (+)
CI01000066_02296138_02305439 CMAH other downstream 1279580 2296071 ~ 2305637 (+)
G271105 NA other downstream 1408080 2430710 ~ 2439169 (+)

Expression


Co-expression Network