CI01000066_01152726_01162533 (C18H12ORF66, CLG8H12ORF66, C19H12ORF66, CUNH12ORF66, CSSA07H12ORF66, CLG23H12ORF66)


Basic Information

Item Value
gene id CI01000066_01152726_01162533
gene name C18H12ORF66, CLG8H12ORF66, C19H12ORF66, CUNH12ORF66, CSSA07H12ORF66, CLG23H12ORF66
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1152331 ~ 1162533 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_01152726_01162533.mRNA
ATGTGTGACATGCAGCGCGATGAGGAACTGCGGCCGGTTCCTAAAGAGCGAGCCGTGCTCGAGAGCTTCTTCACCCAGCTCGGGATGTTCTGGTTCGACAGGGCGAAGGATTATGTGGAAAAGGAGAAGGACGCCAGTAAGAGTGCAGGAGCCATCTGGGCGTCGCTGCTGGCCGCTCTCGCCCACCTGGCAGCCGCAGAGAAAGCCTACCATAACATGACTTTCCTCGGGCAGAAACTGGGTGGTCAGTCGTTCTTCAGCCGTAAGGATTCCATCAGAACCATCTATACGTCTCTGCACAATGAACTGAAGAAGGTGGTCTCCATGGGCCGCCACACATCCGGAGGCTCCACTCCCAACCTGGAGGACCTCCTGTCTCATTTGTCCGAGCAGCTGTGTCACTTCACGCAGGCCAGGATGGAGATCGCAGACTTCTACGAGAAGATGCATTCTCTGGGTAACCAGAAGACTGTGAACTCTGAGGAGCTTGTGAGCACGCTGGAGACCATTTTGCAGAAGTACAGTTCAAGATTCCACCATCCAATCCTGAGCCGCCTCGAGAACAGCTTCCAGGTGGAGGTGGACGTGTTGACACAGCTGCTGCGATGCCAGGCGCAGATCTCCGAGTGGCATTTCCTGCCGTCTCTGCTCAACCTGCACGGCGCCCATTCCAAACTTCAGGCTTGGGGGCAGGTGTTCGAACGGCAACGAGAAACCAGGAAACACCTCTTCGGAGGCCAATCCCAGAAGGCCGTGCAGCCGCCGCACCTCTATCTGTGGCTGCAGCGCCTTCAAGCGACGCTCCTGGCCAAGTTCAGCTTCTACTTCCACGAGGCTCTTAGCCGGCAGACGTCACAGTCCGAAATGAAAACCCTGACGGCTCGCACCTCCCTTGATTACTTCGGCAAGATCTCTGCCTTCATTCGCAAGCATGACGCTTCTAATGTCTCCTTGGTCTTCGACAACCGTGGCTCCGAGAGCTTCCAGGGACACGGATACCACCATCCGCACTCGTACCGTGAAGCCCCCAAAGGCGTGGATCAGTTTCCGGCCGTCGTGTCGCTTCCTGGCGGAGAAAGGCCGGTCACACACTGGCCCAACGTCATCATGATCATGAGCGACCGCACCACGGAGCTCAACGCTCTGGATAAGGTGGTCCACTTTTATGATGATAAAGTCCAGAGCACCTACTTCCTCACGCGTCCCGAGCCGCATTTCACCGTGGTGGTGATCTTCGACGGGAGGAAGTCGGAGAGGGACTCGCACATCGTGGCATTCCTGCAGGAGCTGACGGGATCGCTGAGGAACTCTAAACCCTTCACTACACTCAAACCAGGCTCCAAGGGCTGAACTTCATCATGTAGTTTATTTTAAAAGGATGTTTCAGGTCAATATCGGTTGCTGTTGCTCTTTTATTCACTGTGCTGCTAAAACCGTTGTTGAATATAAACCGTTTTATCCTTTTCGCTTTGAACAACTATTAAAGAGGTCCAAAAGCTTCAAACACATTCAGACCAAAGACAGCTGTGAACATTTGTCTTGTTTTTAATGTGCTCACAACTGAGTGTTCTGGCTTAGCTGTTGGACTTGCTTTACTGAATATGAAAGGGACCCATTGCAAAGAATGTTGATTTCCCCCTTTTATTGTTAATTTGCTATGTGTAAAACATTTTAATAGAGTCTTTGGTTTTAATGTTTTGACTGTTTTCTCCTCCTATTGTGTACATTTTTACTTCTGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_01152726_01162533.mRNA True 1745 mRNA 0.52 3 1152331 1162533

Neighbor

gene id symbol gene type direction distance location
CI01000066_01046248_01048613 AVPR1AB, AVPR1A coding downstream 102967 1046221 ~ 1049364 (-)
CI01000066_01031147_01037984 HCFC2 coding downstream 114344 1030887 ~ 1037987 (-)
CI01000066_00975554_00997209 CHST11 coding downstream 154914 974988 ~ 997417 (-)
CI01000066_00938534_00939532 NA coding downstream 212799 937351 ~ 939532 (-)
CI01000066_00885041_00912917 SCUBE1 coding downstream 239414 884544 ~ 912917 (-)
CI01000066_01270085_01272411 NA coding upstream 106953 1269486 ~ 1272635 (-)
CI01000066_01278191_01288171 NA coding upstream 114944 1277477 ~ 1289175 (-)
CI01000066_01300862_01328030 SHANK3B coding upstream 137205 1299738 ~ 1328182 (-)
CI01000066_01337577_01339728 CDNF coding upstream 174784 1337317 ~ 1339867 (-)
CI01000066_01349294_01355967 DCLRE1C coding upstream 186654 1349187 ~ 1356018 (-)
G271925 NA non-coding downstream 60943 1091148 ~ 1091388 (-)
G271924 NA non-coding downstream 65103 1087005 ~ 1087228 (-)
G271920 NA non-coding downstream 81969 1070077 ~ 1070362 (-)
G271918 NA non-coding downstream 93264 1058796 ~ 1059067 (-)
G271917 NA non-coding downstream 96235 1055853 ~ 1056096 (-)
G271898 NA non-coding upstream 113175 1275708 ~ 1276843 (-)
G271904 NA non-coding upstream 177425 1339958 ~ 1348068 (-)
G272059 NA non-coding upstream 270470 1433003 ~ 1436452 (-)
G272140 NA non-coding upstream 372122 1534655 ~ 1534872 (-)
CI01000066_01823227_01826380 NA other upstream 660496 1823029 ~ 1826817 (-)
CI01000066_01843043_01848783 NA other upstream 679146 1842554 ~ 1849466 (-)
G272221 NA other upstream 796569 1959102 ~ 1985228 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028532 C4H12orf66 coding NC_007115.7 CM002888.2 9339067 ~ 9350585 (-)
bowfin (Amia calva) AMCG00006862 si:ch211-125a15.1,LOC107743608,LOC107726025,LOC107580661,LOC107592225,LOC107658829 coding CM030134.1 CM030134.1 23287256 ~ 23302174 (-)