XLOC_010434 (med18)


Basic Information

Item Value
gene id XLOC_010434
gene name med18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7376471 ~ 7379328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020502
ATACTGCGCATGCGCTTTACTCACATGGACGCAGTTTCATCGAGACACATTATTTTTTCGTAGTATTTTACGCAAatcattagttttgtttattgCTTTTTGATACAAGTACAATATATGCTATTTTTAATTCATCGTCTGCCTGCTTTTTGTTGATAATATCTTCTAACACGTCTTAGCATGTCTATTGTTGTGGATGTTTTCTACAGCAGTTAAAGTTCTAGTTTAAGTTAATCTTTCAACTGATCGTTGACTGTAAATGTATTAAGAGACTTAAGTTCAGAATTATAAtactagtaatagtaataataatagagtgATGGAGGCTCCGCCGGTTACTGTGATGCCCGTCACGGGTGGAACTATAAACATGATGGAGTATCTTCTGCAAGGCAGTGTACTGGACCAATCTCTGGAGAGTCTCTTGCATCGCCTCCGGGGCCTGTGTGATAACATGGAGCCTGAGAGCTTTGCTGATCACGAGTTGGTGTATCTCCTGAAAGGTCAGCAGGGCAACCCGTTCATCCTGCGTGCCCGCCGCTCGCTCCTCGACCCCTCCGTCCCCTGGCACCTGCGCTATCTGGGTCAGCCCGAGGTGGGCGACAAAAGCCGTCATGCCCTGGTGCGGAACTGCGTGGACGTGGCAGCCTCGCACAGCTTGCCTGACTTCCTCAATGAGATGGGCTTCCGCATGGACCATGAGTTCGTGGCCAAGGGTCAGGTGTTCCGGAAGGGTGTGATGAAGGTGGTGGTGAGCAAACTGTCGCGTGTGCTGGTTCCTGGAAACACGGATAACACGGAGCCGCTCTCTCTGTCGTATCTTGTTGAGCTGAGCGTTCTGGCTCCTGCGGGACAGGACACTGTGTCTGAGGACATGAGGAGCTTCGCAGAACAGCTCAAACCTCTCGTTCACCTGGAGAAGATTGATCCCAAAAGACTCATGTAGAGAACATGACCTACAGACTGAGATTTTTAATTCGGTGAATAGGTGttaagactgcatttatttggaatatttttgatgattgttttctttttttgtaattgatgaaatgctaattaaaatctttaaataaaaatattcattcattca

Function

symbol description
med18 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II and termination of RNA polymerase II transcription. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED18 (mediator complex subunit 18).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006369 termination of RNA polymerase II transcription biological_process
GO:0070847 core mediator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040426-1276 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II and termination of RNA polymerase II transcription. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED18 (mediator complex subunit 18).

Ensembl:

ensembl_id ENSDARG00000041237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020502 True 1093 mRNA 0.45 2 7376471 7379328

Neighbor

gene id symbol gene type direction distance location
XLOC_010433 foxo6a coding downstream 13665 7315144 ~ 7362806 (-)
XLOC_010432 si:ch73-341k19.1 coding downstream 136963 7202082 ~ 7239508 (-)
XLOC_010431 pmvk coding downstream 431544 6937186 ~ 6944927 (-)
XLOC_010429 mbpb coding downstream 526690 6803470 ~ 6849781 (-)
XLOC_010430 AL845419.1 coding downstream 546836 6828552 ~ 6829635 (-)
XLOC_010435 prdm1a coding upstream 51670 7430998 ~ 7443388 (-)
XLOC_010436 NA coding upstream 128773 7508101 ~ 7621115 (-)
XLOC_010437 pimr209 coding upstream 309040 7688368 ~ 7692568 (-)
XLOC_010438 BX511173.1 coding upstream 314553 7693881 ~ 7696216 (-)
XLOC_010439 trim71 coding upstream 363330 7742658 ~ 7793457 (-)
XLOC_010626 CR392024.2 misc upstream 13515784 20895112 ~ 20895175 (-)
XLOC_010428 NA non-coding downstream 724752 6648030 ~ 6651719 (-)
XLOC_010427 NA non-coding downstream 741175 6605385 ~ 6635296 (-)
XLOC_010426 NA non-coding downstream 785301 6588022 ~ 6591170 (-)
XLOC_010425 NA non-coding downstream 819970 6512346 ~ 6556501 (-)
XLOC_010441 NA non-coding upstream 454891 7834219 ~ 7881277 (-)
XLOC_010442 CU856516.1 non-coding upstream 588692 7968020 ~ 7984901 (-)
XLOC_010444 NA non-coding upstream 761384 8140712 ~ 8142312 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_00869870_00870423 MED18 coding CI01000065 null 868438 ~ 870423 (-)