CI01000066_02438884_02448563


Basic Information

Item Value
gene id CI01000066_02438884_02448563
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2438834 ~ 2448839 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_02438884_02448563.mRNA
AGAGATTGAAGCTCACTGATAAAGTAGAAGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATCTAACCACCCACAACAAGAGCATCTCATGCATCATGTCGTATTCAACACTTAATTTCCCAGCTGTCCCATCAGCATATTGAGCACATGACCAACTAATTACGTCTGATCTGAGAGCTGCTCGTCTTTAGACCTCCATTATTCACAATGTACTTCTGCCCACTTTAATCAGTAGGATAGCAGAGAGAAGACAGGAAAAGATGGTATGGGAACAGGATCAGGAAGTGACGTCTTGTCAAGAGAGTTCTTCCAGTTCCAGTCAGATTGTGAAGTTGAGGACGTGTGGATTTTTCTGCGTATGATTAACATGTTGAAGAGCTCTTGGAGTGGCGTGTTTTCTGAGATGAACACAATGCTTACAGGGCAGAGATGGGAGACAATAGACCCGTTTACACAAATTGATGGGTCGTCATTTACATCCATCGTGGTTCGTTGGTCCAAAAACATCGGAAGTTTTGATCGTGGCAAAGAAGAAATCCTGCCTCTGAAAGAAGACTCCTCACACTCCATATCCAAGAGCAAGACTTTCTGTCACAGTTGCGTCAGAGCCGGGTTGCGTGAGGTTTTGGATGTCGTAGACGTGCCGCCACATCCAGACAGACCATTAATAGATGCACTCACAATCTCAAATAAATTCCCAGTCACAGATCCCGTCAAACAGGAGAGCCGGATGGCAGTCCAGAAGAGCTCGGAAACCAAGCTCTATAATGGCTCAGACAAGGACGTATCGGCGTCTGGAAACAAACTTACGAAAAAGGAGTCACTCAAGGTACAAAAGAAGAACTACAGGGAAGAGAAGAAACGTGCCACTAAAGAACTGCTCAGCACCATCACTGATCCGTCTGTCATCGTCATGGCCGACTGGCTCAAGATCCGTGGCACGTTGAAGAGCTGGACCAAGCTGTGGTGTGTGCTGAAGCCAGGCGTCCTGCTGATCTATAAGACCAATAAGAACGGCCAGTGGGTCGGTACCGTGCTGCTTAACGCCTGTGAGCTCATCGAGAGACCCTCGAAGAAGGATGGGTTCTGCTTCAAGCTCTTCCACCCGCTCGAGCAGTCCATCTGGGCCGTCAAGGGTCCCAAAGGAGAAGCCGTGGGGTCCATCACACAGCCGTTACCCAGCAGCCACCTGATCTTCAGAGCGGCTTCAGAATCTGACGGCCGGTGTTGGATGGATGCTCTTGAGCTGGCTCTGAAATGCTCGAGTTTGCTGAAGAGAACGATGATCAGAGAGGGCAAAGAGGAGACGCCGCAGACCGCAGAGCAGTCGCACATCAACTTCTACAGTCTGCTGCGGGCGCACAACATGCAGGGCTTTCAGTTTAACGACAGTGACCAGTTCAAGGATCCGGACCTGTACTCGGATAAGTCGGACCGTGAGAATGAGCAGGAGCAGGAGGAGTGGGAAAATGAGGTGATGGAGAAAAGCGAAGAGAGCGACAGCGACACGTCGGAGCGACAGGAAGACTCGTACGTCGACCTGGATCCCAACGAGACGCTGCGGGAAACGCCGTACATTGAGCAGAGCCACGAGGAGCTCGGAGAGGCTGGCGAAGAGTCTCAGACAGAGACAGTATCAGAAGAGAATAAATCTCTGATCTGGACTCTACTGAAGCAGGTCCGGCCCGGCATGGACCTGTCCAAAGTCGTGCTTCCCACCTTCATCTTGGAGCCACGATCCTTCCTGGACAAACTGTCCGATTACTACTACCACGCTGACTTCCTGTCGGAAGCGGCGGTGGAGGAGAACGCTTATAACCGAATGAAGAAGGTGGTCAAATGGTACATTTCTGGATTCTACAAGAAGCCAAAGGGTTTAAAGAAACCGTATAACCCCATTATCGGAGAAACATTTCGCTGTTTATGGATCCACGCCAGGACGAACAGCAAAACCTTCTACATCGCAGAACAGGTATCCCATCATCCTCCAGTTTCAGCCTTTTATGTCAGTAACAGGAAGGATGGCTTTTGTCTCAGCGGCAGCATCCTGGCCAAGTCCAAGTTTTATGGAAACTCTCTGTCGGCCATCTTAGACGGTGAAGCCAGGCTGTCTTTTCTGAACAGAGGGGAGGACTATGTGATGAACATGCCCTACGCTCACTGCAAAGGGACACATCTAGGTATGTTTACATGTGTAGTGACTCGTTTCGACTGGTTTAGATACGTGTGCAGTATCCAGTCTAGATTTTGCATTTAGTTAGAATATGACGGTTTGGTCACACTTTCTACAGTATACCTCTTAATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_02438884_02448563.mRNA True 2318 mRNA 0.49 16 2438834 2448839

Neighbor

gene id symbol gene type direction distance location
CI01000066_02395532_02401122 NAP1L1 coding downstream 37712 2395296 ~ 2401122 (-)
CI01000066_02388814_02390434 PHLDA1 coding downstream 48400 2388620 ~ 2390434 (-)
CI01000066_02325374_02330855 KRR1 coding downstream 107979 2324998 ~ 2330855 (-)
CI01000066_02256946_02264417 CCDC107 coding downstream 173353 2256594 ~ 2265481 (-)
CI01000066_02197683_02248608 KCNC2 coding downstream 187671 2197683 ~ 2251163 (-)
CI01000066_02459724_02480935 NA coding upstream 10866 2459705 ~ 2481167 (-)
CI01000066_02536961_02545237 NA coding upstream 87334 2536173 ~ 2545237 (-)
CI01000066_02548050_02596039 COG5 coding upstream 98901 2547740 ~ 2596419 (-)
CI01000066_02613320_02623007 COG5 coding upstream 164421 2613260 ~ 2623007 (-)
CI01000066_02652332_02680009 SLCO1C1 coding upstream 202488 2651327 ~ 2680040 (-)
G272317 NA non-coding downstream 104446 2334178 ~ 2334388 (-)
G272039 NA non-coding downstream 120407 2317928 ~ 2318427 (-)
G272060 NA non-coding downstream 151848 2285318 ~ 2286986 (-)
G272310 NA non-coding downstream 169773 2268818 ~ 2269061 (-)
G272304 NA non-coding downstream 186282 2252275 ~ 2252552 (-)
G272021 NA non-coding upstream 75663 2524502 ~ 2526631 (-)
G272367 NA non-coding upstream 81959 2530798 ~ 2532380 (-)
G272086 NA non-coding upstream 313309 2762148 ~ 2773639 (-)
G272075 NA non-coding upstream 327122 2775961 ~ 2858298 (-)
CI01000066_02891474_02931062 PLEKHA5 non-coding upstream 479225 2890829 ~ 2931062 (-)
G272221 NA other downstream 453606 1959102 ~ 1985228 (-)
CI01000066_01843043_01848783 NA other downstream 589975 1842554 ~ 1849466 (-)
CI01000066_01823227_01826380 NA other downstream 614131 1823029 ~ 1826817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028417 NA non-coding NC_007115.7 CM002888.2 2392072 ~ 2440175 (-)