CI01000066_02536961_02545237


Basic Information

Item Value
gene id CI01000066_02536961_02545237
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 2536173 ~ 2545237 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000066_02536961_02545237.mRNA
ATGGAGATGAAGTGTTTAACTTTAAAAGATTTGCTTAGTGTGAGGACACTAGTGAATAAGGCAAGCTCGGATGATACCGGCAGCATGAATGACCATAAAGAGAACATCTGCATGGACAGAAGGAAAACGACCCCACTGAAGTGTGACTCTGTGACGGCAGCTGTGAACGGACATAGGAGAGTTTCCAGCCCAGATATCACCCATATAACCCCCATTAAACACACTGAGAGGGCCCATCCGGACCCCTGGACCCCAACAGCCAACCTGAAAATGCTGATCAGCGCCGCCAGCCCAGATATCCGCGACCGAGAGATGAAGAAAACCCTCTTCAGACCCATTGAAAATGAAGAGAAAGCTGTAGAGGAGGAGGAAGAGGAAGAACTCGATGACTCGTGTCAGTATGAAGCTGTAGACGATCCTGAGAGGAGACCCAGTCGCAAACAGAAGAGTTTGGGGCTTTTGTGTCAGAAATTTCTGGCCTTGTACCCTGATTACCCTGAAAATTCGGAAAGCATCAATATTTCTCTGGATGAGGTGGCCACATGCTTGGGCGTTGAGAGGCGACGTATCTACGACATTGTGAATGTGCTGGAGTCTCTGATGCTGGTGAGAAGAATGGCGAAGAACCTGTACGTGTGGCACGGGCGCTCGCAGCTGCCGCAGACCCTGCAGGAACTTCATCAGGCGGGCCGAGAGCAGGGCTACCATCTGCAGATGAACCAGAGAGATGGAAGCAGCCCGTATCCCGCCCACCACATGCAAAACACACACGCTAAGGTACGACGCTTGTATGATATCGCTAATGTCTTGACCAGCCTGAATCTGATCAAGAAACTTCACGTGAGAGAAGAAAAGAGCCGTAAACCCGTCTTTAAATGGATCGGACCTGCCGATTTCCACAGCAGCAGCGATTCAGATGATATGAGGGTCTCAGAAGCTCAGATCAGTACCTCCGTCACGGGCATCGGGGAACGACGAGAGAAGATGACACGTCACGCCTCCTTTCAGGTCATTCCAGCCCCTCCTGTCAATCAAAGACTGATAAGCTCCGCCCCCAGCACACCTCACAGACATTCCACAGATGAGCCGGTGGATTACTCCAGGAAGAGTGTGAACAACAGTGCAGTGTGTCAACTGCAGTTTGGAGACAGTGGAAGCCCTGTAGTGTCTTCTACCGGACTGGCAGTGCCTCTTCAAGCTGACGTCCCGTATGCGTCACTGCCCGTTTCAGCCCAGTTTGCTTCTCACCCATTAGCGTACCTGTCGGGTCTGCCACAAACACCCGTGCTCATGGTGTACAGCGGACATGTGCCCGAGGGCATCAACCAGAGGTCACCCGTCTCAGGCCACAGGGAGGGAAATCCAAAGAGAGAGAGAGAGGAGGAAGAGGAAGATGATCAGGCAGCTAAACGAGGCAAACGCTCTACGTCCATAGAAAGTGAAACAGGTGAGACTGAGAGTTCGAGCTCCAGTGCCAGAAGGTCTCCGATCTGCTCTCGAGAAGGTTCCCCGTGGGACGAGGCCTCGATTGGGCCGATGAATAAGGAAGACGCCAGAACATCCAGTCCCAAAGATGCCCTCGTGTCCTCTCATTACCTCTATGTTCCAAACACAGCAGGTCTGAACGGTTTGAACTTCCTCATGCCAGCGGGACATACACAAGGTGGTGTGCCAACTGTAGCTATGCCGTATTTTTTGGTGCCTTCACCGCTTATAGCGGGTACAATGCCCACCTCCAGTGCTGAGGGAGCTGCCAGCAGTGGTTTGAGTTTCAGCATGCCCACCATGTTGTCACCAGCCTCGTTTGTGATGGCAGGAGGGGCATTTAATGTGGCTGAAACATTGAGCAGCCCTGAGCATCATGGGCACAGAATACCAGTGGCCACATTCTCACCACAGGGACCACGAGTACAAGAGAGCCCTCAGCCCGCACAAACACAGACTCCTGTGACACCAAAGGAAGCAGCACTGGGGTCCAAATCTTTCTTTGAGACACCTGGAGCTTTTGGGTCTCTCACCACCCAAACAGCGGCACGCAAAAGAGGCTCCGCCCAGAGGAGGTTGGACATCGGACACACCGCAGCCAATTAAATTAGCCGCTGCATTTGTGTCATTGGTTTTCAGGCTTCTGTGGTGCTACAGTGCCAAAGACAGAAACAGCATTACACAGCAAAATTTTACTTGAATTATTTCTCGTATATGAACATTTCCTGTTTACTAACATCAGAATAAGAGGATAACTACAGATACTAAAGTTCCACTCAGGGTCTATAGTGTGATATTGGAGATAATCTGTTACACGCCCTTTTGTGGCTCGATTTGTTTTCCCCCCACACCATTTCAGATAGTATTTTGGAGTTTTTTAATATCCTACCAGTGTATTGCCTGATTTTGTTTACAATTATTATTTATTATAGTATTTCCAGAGGCTAAAATCATCAATCCAGCTCTAGCACTACGTATTTAAAAATGTGAAAATGAATTAAGTCTGGATCAGCCTCTGAGAGTAAACCACAGATTTGCGCAGTACTATGTTCATTTGCGTTTAGTATTTCACTAATTCCCAGGTAAAACAGTTTGTAAAAGTGCCATATTGATGAAGCCGACATGCCTTAGAAATGTGTTTGTTACATGATGCCTTCGCCACTAAGAGTGAATGAATAGAAAAGTGTATTTGGGGATAAACAACAAAATAGTGGTTGTACTTTTCTGTTTAAGCTTGAGGTGCTAATGTCTGAAATGAATAGGAAACAAAGACATACTTGAATAACCAGTGAATATGATCTGCAATCACTGGAACAAAGTGGAATTATCACAGTACTGTACTCCTTAAAAACAAAGTGTGTTTATGTGTTAATTGTTCTTAGAGTAGTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000066_02536961_02545237.mRNA True 2879 mRNA 0.48 11 2536173 2545237

Neighbor

gene id symbol gene type direction distance location
CI01000066_02459724_02480935 NA coding downstream 55006 2459705 ~ 2481167 (-)
CI01000066_02438884_02448563 NA coding downstream 87334 2438834 ~ 2448839 (-)
CI01000066_02395532_02401122 NAP1L1 coding downstream 135051 2395296 ~ 2401122 (-)
CI01000066_02388814_02390434 PHLDA1 coding downstream 145739 2388620 ~ 2390434 (-)
CI01000066_02325374_02330855 KRR1 coding downstream 205318 2324998 ~ 2330855 (-)
CI01000066_02548050_02596039 COG5 coding upstream 2503 2547740 ~ 2596419 (-)
CI01000066_02613320_02623007 COG5 coding upstream 68023 2613260 ~ 2623007 (-)
CI01000066_02652332_02680009 SLCO1C1 coding upstream 106090 2651327 ~ 2680040 (-)
CI01000066_02709190_02806338 PDE3A coding upstream 163953 2709190 ~ 2806338 (-)
CI01000066_02874325_02887004 AEBP2 coding upstream 328824 2874061 ~ 2887333 (-)
G272367 NA non-coding downstream 3793 2530798 ~ 2532380 (-)
G272021 NA non-coding downstream 9542 2524502 ~ 2526631 (-)
G272317 NA non-coding downstream 201785 2334178 ~ 2334388 (-)
G272039 NA non-coding downstream 217746 2317928 ~ 2318427 (-)
G272060 NA non-coding downstream 249187 2285318 ~ 2286986 (-)
G272086 NA non-coding upstream 216911 2762148 ~ 2773639 (-)
G272075 NA non-coding upstream 230724 2775961 ~ 2858298 (-)
CI01000066_02891474_02931062 PLEKHA5 non-coding upstream 382827 2890829 ~ 2931062 (-)
G272078 NA non-coding upstream 389348 2934585 ~ 2935546 (-)
G272061 NA non-coding upstream 434227 2979464 ~ 2981352 (-)
G272221 NA other downstream 550945 1959102 ~ 1985228 (-)
CI01000066_01843043_01848783 NA other downstream 687314 1842554 ~ 1849466 (-)
CI01000066_01823227_01826380 NA other downstream 711470 1823029 ~ 1826817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location